View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4929-Insertion-8 (Length: 427)
Name: NF4929-Insertion-8
Description: NF4929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4929-Insertion-8 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 6 - 402
Target Start/End: Original strand, 3519499 - 3519899
Alignment:
| Q |
6 |
caacaactagtatgtcgcagttggatgctaactcaacaacatttggatagtacttgtattttggttccagcttttgagttctagaatagtaacatattga |
105 |
Q |
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| T |
3519499 |
caacgactagtatgtcgcagttggatgctaactcaacaacatttggatagtacttgtattttggttcctgcttttgagttctagaatagtaacatattga |
3519598 |
T |
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| Q |
106 |
acaattaaaaccttcagcttttttcgcaattgctgtgccaatccttcccagcccaataacaccaatggttttcccagagaactgcaaagacac----tat |
201 |
Q |
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| T |
3519599 |
acaattaaaaccttcagctctcttcgcaattgctgtgccaatccttcccagcccaataatgccaaccgttttaccagagaactgcaaagacacaattaat |
3519698 |
T |
|
| Q |
202 |
ttcttgttggaaaatgacggggaggaatactacgcgagaacacatataaccgattttaatgagcagtatggcacaattatatgattgaagttctgcaaac |
301 |
Q |
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|| | ||||||||||| |||||||||||||||| ||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
3519699 |
ttgtcgttggaaaatggcggggaggaatactacatgagaatacatgtaaccgattttaatgagaagtatggcacaattatatgattgaagttttgcaaac |
3519798 |
T |
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| Q |
302 |
cttacagcatgatacatcactgtgtcacattttaaatgtttttaaccgtatcttgaaagcttacgaattgtaaatattgaaaaataggtggttttgtcaa |
401 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
3519799 |
cttacagcatgataaatcactgtgtcacattttaaatgtttttaaccgtttcttgaaagcttacaaactgtaaatattgaaaaataggtggttttgtcaa |
3519898 |
T |
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| Q |
402 |
t |
402 |
Q |
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| T |
3519899 |
t |
3519899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 6 - 192
Target Start/End: Original strand, 3479891 - 3480077
Alignment:
| Q |
6 |
caacaactagtatgtcgcagttggatgctaactcaacaacatttggatagtacttgtattttggttccagcttttgagttctagaatagtaacatattga |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||| |
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| T |
3479891 |
caacaactagtatgtcgcagttggatgctaactcaacaacatttggatagtacttgtattttgactcctgcttttgagttctagaatagtagcatattga |
3479990 |
T |
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| Q |
106 |
acaattaaaaccttcagcttttttcgcaattgctgtgccaatccttcccagcccaataacaccaatggttttcccagagaactgcaa |
192 |
Q |
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||||||||||||||||||| | || |||||||||||||||||||| |||||||||| || |||| ||||||||||||||||||||| |
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| T |
3479991 |
acaattaaaaccttcagctctcttggcaattgctgtgccaatcctgcccagcccaacaatgccaacggttttcccagagaactgcaa |
3480077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 6 - 192
Target Start/End: Complemental strand, 3536911 - 3536725
Alignment:
| Q |
6 |
caacaactagtatgtcgcagttggatgctaactcaacaacatttggatagtacttgtattttggttccagcttttgagttctagaatagtaacatattga |
105 |
Q |
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||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3536911 |
caacaaccagtatgtcgcagttggatgctaactcaataaggcttggatagtacttgtattttggttcctgcttttgagttctagaatagtaacatattga |
3536812 |
T |
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| Q |
106 |
acaattaaaaccttcagcttttttcgcaattgctgtgccaatccttcccagcccaataacaccaatggttttcccagagaactgcaa |
192 |
Q |
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| T |
3536811 |
acaattaaaaccttcagctctcttggcaactgctgtgccaatccttcccattccaataatgccaatggttttcccagagaactgcaa |
3536725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 6 - 191
Target Start/End: Original strand, 3523047 - 3523232
Alignment:
| Q |
6 |
caacaactagtatgtcgcagttggatgctaactcaacaacatttggatagtacttgtattttggttccagcttttgagttctagaatagtaacatattga |
105 |
Q |
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||||||||||||| || ||||||||||| | |||||||||| ||||||||||||||||||||| ||| ||||||||||||| |||||||| |||||| |
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| T |
3523047 |
caacaactagtatatcacagttggatgcaagctcaacaacacttggatagtacttgtattttgactcctgcttttgagttctcgaatagtaggatattgg |
3523146 |
T |
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| Q |
106 |
acaattaaaaccttcagcttttttcgcaattgctgtgccaatccttcccagcccaataacaccaatggttttcccagagaactgca |
191 |
Q |
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||| ||||| ||||||||| | || ||||| |||| ||||||||||||||||||||||| || | ||||||||||||||||||| |
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| T |
3523147 |
acagttaaagccttcagctctcttggcaatggctgcgccaatccttcccagcccaataatgccgacagttttcccagagaactgca |
3523232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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