View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4929-Insertion-9 (Length: 378)
Name: NF4929-Insertion-9
Description: NF4929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4929-Insertion-9 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 7 - 189
Target Start/End: Complemental strand, 31458161 - 31457979
Alignment:
| Q |
7 |
atgagaagcatgtttatcacaacattagttaattatttcaaagcaaatatttcaccgtccacgaccattaacctcaccatctttctttataaatagtgaa |
106 |
Q |
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| T |
31458161 |
atgagaagcatgtttatcacaacattagttaattatttcaaagcaaatatttcaccgtccacgaccattaacttcaccatctttctttataaatagcgaa |
31458062 |
T |
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| Q |
107 |
ccagttatactatgtttgtacaataccactatccatttagaaaattcttatatttcaaattgtttttgtgatcatttgaaaca |
189 |
Q |
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| T |
31458061 |
ccagttatactatgtttgtacaataccactatccatttagaaaattcttatatttcaaattgtttttgtgatcatttgaaaca |
31457979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 239 - 378
Target Start/End: Complemental strand, 31457929 - 31457787
Alignment:
| Q |
239 |
cgcaaaaggaggcggcggt---ggaagcaaagggtccaccggtggcagtggtggtggggattcaatgaaagcaccgggaggtggtggatcatacatatct |
335 |
Q |
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| T |
31457929 |
cgcaaaaggaggcggtggtaccggaagcaaagggtccaccggtggcagtggtggtggggattcaatgaaagcacctggaggtggtggatcatacatatct |
31457830 |
T |
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| Q |
336 |
cgtggtgcatttgaaaacaaccctcaaggctattttagtggtc |
378 |
Q |
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| T |
31457829 |
cgtggtgcatttgaaaacaaccctcaaggctattttagtggtc |
31457787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 118; Significance: 4e-60; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 241 - 378
Target Start/End: Complemental strand, 49085873 - 49085736
Alignment:
| Q |
241 |
caaaaggaggcggcggtggaagcaaagggtccaccggtggcagtggtggtggggattcaatgaaagcaccgggaggtggtggatcatacatatctcgtgg |
340 |
Q |
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| T |
49085873 |
caaaaggaggcggtggtggaagcaaagggtccaccggtggcagtggtggtggagattcaatgaaagcaccgggaggtggtggatcatacatatctcgtgg |
49085774 |
T |
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| Q |
341 |
tgcatttgaaaacaaccctcaaggctattttagtggtc |
378 |
Q |
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| T |
49085773 |
tgcatttgaaagcaacccacaaggctattttggtggtc |
49085736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 54 - 189
Target Start/End: Complemental strand, 49086081 - 49085937
Alignment:
| Q |
54 |
tatttcaccgtccacgaccattaacctcaccatctttctttataaatagtgaaccagttatactatgtttgtac-------aataccactatccattt-- |
144 |
Q |
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| T |
49086081 |
tatttcaccggccacgaccattaacttcaccattttt-tttctaaatagggagccagttatactgtgtttgtactttgtacaatactaccatccatttct |
49085983 |
T |
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| Q |
145 |
-agaaaattcttatatttcaaattgtttttgtgatcatttgaaaca |
189 |
Q |
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| T |
49085982 |
tagaaaattcttatatttcaaattgtttttgtgatcgtttgaaaca |
49085937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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