View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4929_high_2 (Length: 368)

Name: NF4929_high_2
Description: NF4929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4929_high_2
NF4929_high_2
[»] chr8 (6 HSPs)
chr8 (5-359)||(267773-268127)
chr8 (5-359)||(647794-648148)
chr8 (5-359)||(833529-833883)
chr8 (61-341)||(9506040-9506320)
chr8 (58-118)||(291198-291258)
chr8 (175-216)||(291100-291141)
[»] chr1 (3 HSPs)
chr1 (5-359)||(18213743-18214091)
chr1 (57-337)||(165581-165861)
chr1 (57-337)||(140187-140467)
[»] chr3 (3 HSPs)
chr3 (58-355)||(17778945-17779248)
chr3 (58-355)||(19080246-19080549)
chr3 (58-359)||(2293568-2293869)
[»] chr2 (6 HSPs)
chr2 (56-335)||(18598690-18598969)
chr2 (159-337)||(19387473-19387651)
chr2 (251-355)||(29559973-29560077)
chr2 (56-116)||(18604404-18604464)
chr2 (70-113)||(19387697-19387740)
chr2 (157-222)||(29560106-29560171)
[»] chr6 (5 HSPs)
chr6 (252-355)||(19822551-19822654)
chr6 (252-355)||(19887641-19887744)
chr6 (159-217)||(19822689-19822747)
chr6 (159-217)||(19887779-19887837)
chr6 (79-118)||(19822788-19822827)
[»] chr7 (1 HSPs)
chr7 (58-216)||(12861281-12861439)


Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 5 - 359
Target Start/End: Complemental strand, 268127 - 267773
Alignment:
Q  5 cactaaataccgaaggtgctatacttttcacagtacttggatttggaccatcatttcctgcagcctgcactgtcagtattccattctccatggcatgaaa 104  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  268127 cactaaatacccaaggtgctatacttttcacagtacttggatttggaccatcatttcctgcagcctgcactgtcagtattccattctccatggcatgaaa 268028  T
Q  105 agaaccaatggcaaaagcatcatccacaaactcataagcttgtggtttacccatagagacagtgatgacatcaactccatcagcaatggcatcatcgaat 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  268027 agaaccaatggcaaaagcatcatccacaaactcataagcttgtggtttacccatagagacagtgatgacatcaactccatcagcaatggcatcatcgaat 267928  T
Q  205 gcagataaaatagcatcatcagagcacatacctagattgttgcaggttttgtatgcagcaattcttgaagatggtgctccacctcctgcagtgccttttg 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  267927 gcagataaaatagcatcatcagagcacatacctagattgttgcaggttttgtatgcagcaattcttgaagatggtgctccacctcttgcagtgccttttg 267828  T
Q  305 cgagaccataaaagcttacacccttcacctcacttccgccggctgttgatgatgt 359  Q
    | |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  267827 caagaccataaaagcttacacccttcacctcacttccgccggctgtcgatgatgt 267773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 5 - 359
Target Start/End: Original strand, 647794 - 648148
Alignment:
Q  5 cactaaataccgaaggtgctatacttttcacagtacttggatttggaccatcatttcctgcagcctgcactgtcagtattccattctccatggcatgaaa 104  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  647794 cactaaatacccaaggtgctatacttttcacagtacttggatttggaccatcatttcctgcagcctgcactgtcagtattccattctccatggcatgaaa 647893  T
Q  105 agaaccaatggcaaaagcatcatccacaaactcataagcttgtggtttacccatagagacagtgatgacatcaactccatcagcaatggcatcatcgaat 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  647894 agaaccaatggcaaaagcatcatccacaaactcataagcttgtggtttacccatagagacagtgatgacatcaactccatcagcaatggcatcatcgaat 647993  T
Q  205 gcagataaaatagcatcatcagagcacatacctagattgttgcaggttttgtatgcagcaattcttgaagatggtgctccacctcctgcagtgccttttg 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  647994 gcagataaaatagcatcatcagagcacatacctagattgttgcaggttttgtatgcagcaattcttgaagatggtgctccacctcttgcagtgccttttg 648093  T
Q  305 cgagaccataaaagcttacacccttcacctcacttccgccggctgttgatgatgt 359  Q
    | |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  648094 caagaccataaaagcttacacccttcacctcacttccgccggctgtcgatgatgt 648148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 5 - 359
Target Start/End: Original strand, 833529 - 833883
Alignment:
Q  5 cactaaataccgaaggtgctatacttttcacagtacttggatttggaccatcatttcctgcagcctgcactgtcagtattccattctccatggcatgaaa 104  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  833529 cactaaatacccaaggtgctatacttttcacagtacttggatttggaccatcatttcctgcagcctgcactgtcagtattccattctccatggcatgaaa 833628  T
Q  105 agaaccaatggcaaaagcatcatccacaaactcataagcttgtggtttacccatagagacagtgatgacatcaactccatcagcaatggcatcatcgaat 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  833629 agaaccaatggcaaaagcatcatccacaaactcataagcttgtggtttacccatagagacagtgatgacatcaactccatcagcaatggcatcatcgaat 833728  T
Q  205 gcagataaaatagcatcatcagagcacatacctagattgttgcaggttttgtatgcagcaattcttgaagatggtgctccacctcctgcagtgccttttg 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  833729 gcagataaaatagcatcatcagagcacatacctagattgttgcaggttttgtatgcagcaattcttgaagatggtgctccacctcttgcagtgccttttg 833828  T
Q  305 cgagaccataaaagcttacacccttcacctcacttccgccggctgttgatgatgt 359  Q
    | |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  833829 caagaccataaaagcttacacccttcacctcacttccgccggctgtcgatgatgt 833883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 61 - 341
Target Start/End: Complemental strand, 9506320 - 9506040
Alignment:
Q  61 cctgcagcctgcactgtcagtattccattctccatggcatgaaaagaaccaatggcaaaagcatcatccacaaactcataagcttgtggtttacccatag 160  Q
    |||||||||||||| || |||||||| || |||||||||||||||||||||||||||| || ||| |  | ||| ||   |||   ||| || || || |    
T  9506320 cctgcagcctgcaccgtgagtattcccttttccatggcatgaaaagaaccaatggcaataggatcttttagaaattctacagcaattgggttcccaattg 9506221  T
Q  161 agacagtgatgacatcaactccatcagcaatggcatcatcgaatgcagataaaatagcatcatcagagcacatacctagattgttgcaggttttgtatgc 260  Q
    |||  ||||| |  |||||||||||||||||||||||||| ||||||| ||||||| |||   ||  |||  ||||     |||||||   ||||||| |    
T  9506220 agattgtgataatgtcaactccatcagcaatggcatcatcaaatgcagctaaaatatcatttccattgcaagtaccatctgtgttgcatactttgtatac 9506121  T
Q  261 agcaattcttgaagatggtgctccacctcctgcagtgccttttgcgagaccataaaagcttacacccttcacctcacttcc 341  Q
    |||||| |||||||||||  ||||||||| ||| ||||||||||| |||||||||||||| || ||| ||||||| |||||    
T  9506120 agcaatccttgaagatgggactccacctcttgcggtgccttttgcaagaccataaaagctcactcccatcacctctcttcc 9506040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 118
Target Start/End: Complemental strand, 291258 - 291198
Alignment:
Q  58 tttcctgcagcctgcactgtcagtattccattctccatggcatgaaaagaaccaatggcaa 118  Q
    ||||||||||||||||| || |||||||| || ||||||||||||||||||||||||||||    
T  291258 tttcctgcagcctgcaccgtgagtattcccttttccatggcatgaaaagaaccaatggcaa 291198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 291141 - 291100
Alignment:
Q  175 tcaactccatcagcaatggcatcatcgaatgcagataaaata 216  Q
    |||||||||||||||||||||||||| ||||||| |||||||    
T  291141 tcaactccatcagcaatggcatcatcaaatgcagctaaaata 291100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 5 - 359
Target Start/End: Complemental strand, 18214091 - 18213743
Alignment:
Q  5 cactaaataccgaaggtgctatacttttcacagtacttggatttggaccatcatttcctgcagcctgcactgtcagtattccattctccatggcatgaaa 104  Q
    ||||||||| | |||||||| ||||    |||||||||||| | || ||| ||||||||||||| |||||||| |||||||| |||||||||||||||||    
T  18214091 cactaaataaccaaggtgctttactagaaacagtacttggaatagggccaccatttcctgcagcttgcactgtgagtattcccttctccatggcatgaaa 18213992  T
Q  105 agaaccaatggcaaaagcatcatccacaaactcataagcttgtggtttacccatagagacagtgatgacatcaactccatcagcaatggcatcatcgaat 204  Q
    ||||||||| |||| || ||||| || ||| |||   |  |  ||   |||||| |||| ||| |||||||||||||||||||||||||||||||| |||    
T  18213991 agaaccaattgcaatagtatcattcaaaaattcaatggaattagggaaacccattgagatagtaatgacatcaactccatcagcaatggcatcatcaaat 18213892  T
Q  205 gcagataaaatagcatcatcagagcacatacctagattgttgcaggttttgtatgcagcaattcttgaagatggtgctccacctcctgcagtgccttttg 304  Q
    || | ||| ||||||| | |   ||   |||   |  |||||||   ||||||||  || || ||||||||||| |||||||||| |||| |||||||||    
T  18213891 gctgctaatatagcataacc---gc---tacaacgcctgttgcaaactttgtatgtggcgatccttgaagatggagctccacctcgtgcaatgccttttg 18213798  T
Q  305 cgagaccataaaagcttacacccttcacctcacttccgccggctgttgatgatgt 359  Q
    | | |||||||||||| ||||| |||||||||| ||| ||  || ||||||||||    
T  18213797 caataccataaaagctcacacctttcacctcacgtccacctactattgatgatgt 18213743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 57 - 337
Target Start/End: Original strand, 165581 - 165861
Alignment:
Q  57 atttcctgcagcctgcactgtcagtattccattctccatggcatgaaaagaaccaatggcaaaagcatcatccacaaactcataagcttgtggtttaccc 156  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||||||||| || |||| ||  |||| || ||| ||||||  |   ||   ||      
T  165581 atttcctgcagcctgcactgtgagtattcccttctccatggcatgaaaagaaccgatagcaatagggtcattcaaaaaatcataaaatctaggggcacaa 165680  T
Q  157 atagagacagtgatgacatcaactccatcagcaatggcatcatcgaatgcagataaaatagcatcatcagagcacatacctagattgt-tgcaggttttg 255  Q
    ||||||| ||| |||||||||||||||||||||||||||||||| ||||| |  || ||| || ||  |   || | |||| |||| | ||||   ||||    
T  165681 atagagatagtaatgacatcaactccatcagcaatggcatcatcaaatgctgccaatataccaacaggactacataaacct-gattttgtgcaaactttg 165779  T
Q  256 tatgcagcaattcttgaagatggtgctccacctcctgcagtgccttttgcgagaccataaaagcttacacccttcacctcac 337  Q
    ||||||||||| |||||||||||  ||||||||| |||| | ||||||||   |||||||||||||||||| ||||||||||    
T  165780 tatgcagcaatccttgaagatggaactccacctcttgcaattccttttgcataaccataaaagcttacacctttcacctcac 165861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 57 - 337
Target Start/End: Original strand, 140187 - 140467
Alignment:
Q  57 atttcctgcagcctgcactgtcagtattccattctccatggcatgaaaagaaccaatggcaaaagcatcatccacaaactcataagcttgtggtttaccc 156  Q
    ||||||| || |||||||||| |||||||| |||||||||||||||||||||||||| |||| ||  |||  || ||| ||||||      ||   ||      
T  140187 atttcctacaccctgcactgtgagtattcctttctccatggcatgaaaagaaccaatagcaatagggtcaatcaaaaaatcataaaaagtagggacacaa 140286  T
Q  157 atagagacagtgatgacatcaactccatcagcaatggcatcatcgaatgcagataaaatagcatcatcagagcacatacctagatt-gttgcaggttttg 255  Q
    ||||||| ||| |||||||||||||||||| ||||||||||||| |||||||  |  ||| || || |||  || | |||| ||||  |||||   ||||    
T  140287 atagagatagtaatgacatcaactccatcatcaatggcatcatcaaatgcagcaagtataccaacaccagtacataaacct-gattctttgcaaactttg 140385  T
Q  256 tatgcagcaattcttgaagatggtgctccacctcctgcagtgccttttgcgagaccataaaagcttacacccttcacctcac 337  Q
    ||||||||||| |||||||||||  ||||||||| |||| ||||||||||   ||||||||||||  |||| || |||||||    
T  140386 tatgcagcaatccttgaagatggaactccacctcttgcaatgccttttgcataaccataaaagctcgcaccttttacctcac 140467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 7e-31; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 58 - 355
Target Start/End: Original strand, 17778945 - 17779248
Alignment:
Q  58 tttcctgcagcctgcactgtcagtattccattctccatggcatgaaaagaaccaatggcaaaagcatcatccacaaactcataagcttgtggtttaccca 157  Q
    ||||| ||||||||   ||| |||||||| ||||||||||||||||||||||||||||||| || ||||| || ||| ||  | || |||     ||| |    
T  17778945 tttccggcagcctgtgttgtgagtattcctttctccatggcatgaaaagaaccaatggcaataggatcattcagaaaatcggaggcatgttcgggaccaa 17779044  T
Q  158 tagagacagtgatgacatcaactccatcagcaatggcatcatcgaatgcagataaaatagcatcatcagagcacatacc------tagattgttgcaggt 251  Q
     |||||| |||||||| ||||||||||||| ||| |||||||| ||||| | ||||||||||||| ||  |||  ||||      || || |  |||  |    
T  17779045 gagagactgtgatgacgtcaactccatcagaaattgcatcatcaaatgccgctaaaatagcatcaccactgcatctaccgttatctatatcgccgcatat 17779144  T
Q  252 tttgtatgcagcaattcttgaagatggtgctccacctcctgcagtgccttttgcgagaccataaaagcttacacccttcacctcacttccgccggctgtt 351  Q
    ||||||||||||||| |||||||||||  ||||||||| ||||||||||||||| | |||||||||||| ||| ||| |||||| ||||| || || |||    
T  17779145 tttgtatgcagcaatccttgaagatggaactccacctcttgcagtgccttttgcaaaaccataaaagctcacatcctccacctctcttccacctgccgtt 17779244  T
Q  352 gatg 355  Q
    ||||    
T  17779245 gatg 17779248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 58 - 355
Target Start/End: Original strand, 19080246 - 19080549
Alignment:
Q  58 tttcctgcagcctgcactgtcagtattccattctccatggcatgaaaagaaccaatggcaaaagcatcatccacaaactcataagcttgtggtttaccca 157  Q
    ||||| ||||||||   ||| |||||||| ||||||||||||||||||||||||||||||| || ||||| || ||| ||  | || |||     ||| |    
T  19080246 tttccggcagcctgtgttgtgagtattcctttctccatggcatgaaaagaaccaatggcaataggatcattcagaaaatcggaggcatgttcgggaccaa 19080345  T
Q  158 tagagacagtgatgacatcaactccatcagcaatggcatcatcgaatgcagataaaatagcatcatcagagcacatacc------tagattgttgcaggt 251  Q
     |||||| |||||||| ||||||||||||| ||| |||||||| ||||| | ||||||||||||| ||  |||  ||||      || || |  |||  |    
T  19080346 gagagactgtgatgacgtcaactccatcagaaattgcatcatcaaatgccgctaaaatagcatcaccactgcatctaccgttatctatatcgccgcatat 19080445  T
Q  252 tttgtatgcagcaattcttgaagatggtgctccacctcctgcagtgccttttgcgagaccataaaagcttacacccttcacctcacttccgccggctgtt 351  Q
    ||||||||||||||| |||||||||||  ||||||||| ||||||||||||||| | |||||||||||| ||| ||| |||||| ||||| || || |||    
T  19080446 tttgtatgcagcaatccttgaagatggaactccacctcttgcagtgccttttgcaaaaccataaaagctcacatcctccacctctcttccacctgccgtt 19080545  T
Q  352 gatg 355  Q
    ||||    
T  19080546 gatg 19080549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 58 - 359
Target Start/End: Complemental strand, 2293869 - 2293568
Alignment:
Q  58 tttcctgcagcctgcactgtcagtattccattctccatggcatgaaaagaaccaatggcaaaagcatcatccacaaactcataagcttgtggtttaccca 157  Q
    |||||||| ||||||| ||| |||||||| ||||||||||||||||||| |||||||||||  | |||||  | ||| |||   || | |||   ||| |    
T  2293869 tttcctgctgcctgcagtgttagtattcccttctccatggcatgaaaagcaccaatggcaactggatcattaaaaaattcagcggcatatggaacaccaa 2293770  T
Q  158 tagagacagtgatgacatcaactccatcagcaatggcatcatcgaatgcagataaaatagcatcatcagagcacatacctagattgttgcaggttttgta 257  Q
     |||||||||||| || |||||||||||||||||||||||||| ||||||| ||||||   |||| ||  ||| |||||      | ||||   ||||||    
T  2293769 gagagacagtgataacgtcaactccatcagcaatggcatcatcaaatgcagctaaaattagatcaccactgcatataccacctaagatgcatactttgta 2293670  T
Q  258 tgcagcaattcttgaagatggtgctccacctcctgcagtgccttttgcgagaccataaaagcttacacccttcacctcacttccgccggctgttgatgat 357  Q
    | ||||||| |||||||||||  || |||||| |||||| |||| ||| |||||| ||||||| ||||||||||| |||| ||| || ||| ||||||||    
T  2293669 tacagcaatccttgaagatggaactgcacctcttgcagttccttctgcaagaccaaaaaagctcacacccttcacttcacgtccacctgctattgatgat 2293570  T
Q  358 gt 359  Q
    ||    
T  2293569 gt 2293568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 7e-28; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 56 - 335
Target Start/End: Complemental strand, 18598969 - 18598690
Alignment:
Q  56 catttcctgcagcctgcactgtcagtattccattctccatggcatgaaaagaaccaatggcaaaagcatcatccacaaactcataagcttgtggtttacc 155  Q
    |||||||||||| ||||||||| |||||||| ||||||||||||||||||||||| ||||| | || ||||  || ||| |||   || |  ||   | |    
T  18598969 catttcctgcagactgcactgtgagtattcccttctccatggcatgaaaagaaccgatggcgatagaatcactcaaaaaatcaatggcattaggggcatc 18598870  T
Q  156 catagagacagtgatgacatcaactccatcagcaatggcatcatcgaatgcagataaaatagcatcatcagagcacatacctagattgttgcaggttttg 255  Q
     | ||||| ||||||||| ||||||||||| |||||||||||||| ||||||| ||| | | |||||| || |||   ||| | |   |||||  |||||    
T  18598869 aagagagatagtgatgacgtcaactccatcggcaatggcatcatcaaatgcagctaatacaacatcattagtgcatgcaccaaaaacattgcaaattttg 18598770  T
Q  256 tatgcagcaattcttgaagatggtgctccacctcctgcagtgccttttgcgagaccataaaagcttacacccttcacctc 335  Q
    |||||| |||| |||||||||||   |||||||| |||| | || |||||||||||||||||||||||| | ||||||||    
T  18598769 tatgcatcaatccttgaagatgggattccacctcttgcaattccatttgcgagaccataaaagcttacatcattcacctc 18598690  T

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Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 159 - 337
Target Start/End: Complemental strand, 19387651 - 19387473
Alignment:
Q  159 agagacagtgatgacatcaactccatcagcaatggcatcatcgaatgcagataaaatagcatcatcagagcacatacctagattgttgcaggttttgtat 258  Q
    ||||| ||||||||| |||||||||||||||||||||||||| ||||||| ||| |||||||||| || |||  |||| | ||  |||||  ||||||||    
T  19387651 agagatagtgatgacgtcaactccatcagcaatggcatcatcaaatgcagctaatatagcatcattagtgcatgtaccaaaatcattgcaacttttgtat 19387552  T
Q  259 gcagcaattcttgaagatggtgctccacctcctgcagtgccttttgcgagaccataaaagcttacacccttcacctcac 337  Q
    |||| ||| |||||||||||   |||||||| |||| | || || || |||||||||||||| ||| | ||||||||||    
T  19387551 gcagtaatccttgaagatgggattccacctcttgcaattccattcgcaagaccataaaagctcacatcattcacctcac 19387473  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 251 - 355
Target Start/End: Complemental strand, 29560077 - 29559973
Alignment:
Q  251 ttttgtatgcagcaattcttgaagatggtgctccacctcctgcagtgccttttgcgagaccataaaagcttacacccttcacctcacttccgccggctgt 350  Q
    ||||||||| |||||| |||||||||||  ||||||||| |||||||||||| || |||||||||||||| ||| |||| |||||| |||| || | |||    
T  29560077 ttttgtatgtagcaatccttgaagatgggactccacctcttgcagtgcctttagcaagaccataaaagctcacatccttaacctcaattccacctgttgt 29559978  T
Q  351 tgatg 355  Q
    |||||    
T  29559977 tgatg 29559973  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 18604464 - 18604404
Alignment:
Q  56 catttcctgcagcctgcactgtcagtattccattctccatggcatgaaaagaaccaatggc 116  Q
    |||||| ||||| ||||||||| |||||||| |||||||||||||||||||||||||||||    
T  18604464 catttcttgcagactgcactgtgagtattcccttctccatggcatgaaaagaaccaatggc 18604404  T

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Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 113
Target Start/End: Complemental strand, 19387740 - 19387697
Alignment:
Q  70 tgcactgtcagtattccattctccatggcatgaaaagaaccaat 113  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  19387740 tgcactgtgagtattccattctccatggcatgaaaagaaccaat 19387697  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 29560171 - 29560106
Alignment:
Q  157 atagagacagtgatgacatcaactccatcagcaatggcatcatcgaatgcagataaaatagcatca 222  Q
    ||||||| ||||||||  ||||||||||||||||| |||||||| ||||| | ||||||| |||||    
T  29560171 atagagatagtgatgatgtcaactccatcagcaattgcatcatcaaatgctgctaaaataacatca 29560106  T

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Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 252 - 355
Target Start/End: Complemental strand, 19822654 - 19822551
Alignment:
Q  252 tttgtatgcagcaattcttgaagatggtgctccacctcctgcagtgccttttgcgagaccataaaagcttacacccttcacctcacttccgccggctgtt 351  Q
    ||||||| |||||||||||||||||||  ||||||||| ||||||||||||||| |||||||||||||| ||| | ||||||| |||||| || ||||||    
T  19822654 tttgtatacagcaattcttgaagatgggactccacctcttgcagtgccttttgcaagaccataaaagctgacatcattcacctgacttccacctgctgtt 19822555  T
Q  352 gatg 355  Q
    ||||    
T  19822554 gatg 19822551  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 252 - 355
Target Start/End: Complemental strand, 19887744 - 19887641
Alignment:
Q  252 tttgtatgcagcaattcttgaagatggtgctccacctcctgcagtgccttttgcgagaccataaaagcttacacccttcacctcacttccgccggctgtt 351  Q
    ||||||| |||||||||||||||||||  ||||||||| ||||||||||||||| |||||||||||||| ||| | ||||||| |||||| || ||||||    
T  19887744 tttgtatacagcaattcttgaagatgggactccacctcttgcagtgccttttgcaagaccataaaagctgacatcattcacctgacttccacctgctgtt 19887645  T
Q  352 gatg 355  Q
    ||||    
T  19887644 gatg 19887641  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 19822747 - 19822689
Alignment:
Q  159 agagacagtgatgacatcaactccatcagcaatggcatcatcgaatgcagataaaatag 217  Q
    |||| |||||||||  |||||||||||||||||||||||||| ||||||| ||| ||||    
T  19822747 agaggcagtgatgatgtcaactccatcagcaatggcatcatcaaatgcagctaatatag 19822689  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 19887837 - 19887779
Alignment:
Q  159 agagacagtgatgacatcaactccatcagcaatggcatcatcgaatgcagataaaatag 217  Q
    ||||| ||||||||  |||||||||||||||||||||||||| ||||||| ||| ||||    
T  19887837 agagatagtgatgatgtcaactccatcagcaatggcatcatcaaatgcagctaatatag 19887779  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 79 - 118
Target Start/End: Complemental strand, 19822827 - 19822788
Alignment:
Q  79 agtattccattctccatggcatgaaaagaaccaatggcaa 118  Q
    ||||| || |||||||||||||||||||||||||||||||    
T  19822827 agtatacccttctccatggcatgaaaagaaccaatggcaa 19822788  T

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Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 58 - 216
Target Start/End: Original strand, 12861281 - 12861439
Alignment:
Q  58 tttcctgcagcctgcactgtcagtattccattctccatggcatgaaaagaaccaatggcaaaagcatcatccacaaactcataagcttgtggtttaccca 157  Q
    ||||||||||| |||||||| |||||||| ||||||||||||||||| ||||||||||||| || ||| |  | ||| ||| |  ||||| ||   || |    
T  12861281 tttcctgcagcttgcactgtgagtattcccttctccatggcatgaaatgaaccaatggcaagaggatcttggaaaaattcaaagacttgttgtgccccaa 12861380  T
Q  158 tagagacagtgatgacatcaactccatcagcaatggcatcatcgaatgcagataaaata 216  Q
    |||| |  ||||| | ||||||||||||||||||||||||||| ||||||| |||||||    
T  12861381 tagatattgtgataatatcaactccatcagcaatggcatcatcaaatgcagctaaaata 12861439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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