View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4929_high_4 (Length: 229)

Name: NF4929_high_4
Description: NF4929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4929_high_4
NF4929_high_4
[»] chr7 (2 HSPs)
chr7 (1-216)||(36775409-36775624)
chr7 (39-85)||(47536693-47536739)
[»] scaffold0157 (1 HSPs)
scaffold0157 (7-86)||(26429-26508)
[»] chr4 (3 HSPs)
chr4 (7-86)||(12493969-12494048)
chr4 (7-82)||(21570231-21570306)
chr4 (7-85)||(44218839-44218917)
[»] chr2 (2 HSPs)
chr2 (43-123)||(33320990-33321070)
chr2 (7-85)||(370994-371072)
[»] chr1 (1 HSPs)
chr1 (43-123)||(41196374-41196454)
[»] chr5 (1 HSPs)
chr5 (7-85)||(42962250-42962328)


Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 36775409 - 36775624
Alignment:
Q  1 acaaacaaaatggcgtacgctgcgatgaaacccacgaagcctggtttggaggaatctcaggaacagatccataagattaggatcaccctttcctccaagc 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36775409 acaaacaaaatggcgtacgctgcgatgaaacccaccaagcctggtttggaggaatctcaggaacagatccataagattaggatcaccctttcctccaagc 36775508  T
Q  101 atgtcaaaaatctcgagaagggtacgttctgttaatctttcctttatgtttatgttgctttcacaacaacactgacttttcgtttttgacttgtttttat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  36775509 atgtcaaaaatctcgagaagggtacgttctgttaatctttcctttatgtttatgttgctttcacaacaacactgactttttgtttttgacttgttgttat 36775608  T
Q  201 tagtttgtgccgattt 216  Q
    ||||||||||||||||    
T  36775609 tagtttgtgccgattt 36775624  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 85
Target Start/End: Original strand, 47536693 - 47536739
Alignment:
Q  39 gcctggtttggaggaatctcaggaacagatccataagattaggatca 85  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||    
T  47536693 gcctggtttgaaagaatctcaggaacagatccataagattaggatca 47536739  T

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Target: scaffold0157 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 26508 - 26429
Alignment:
Q  7 aaaatggcgtacgctgcgatgaaacccacgaagcctggtttggaggaatctcaggaacagatccataagattaggatcac 86  Q
    |||||||| |||||||| |||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  26508 aaaatggcatacgctgcaatgaaaccaactaagcctggtttggaagaatctcaggaacagatccataagattaggatcac 26429  T

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Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 86
Target Start/End: Original strand, 12493969 - 12494048
Alignment:
Q  7 aaaatggcgtacgctgcgatgaaacccacgaagcctggtttggaggaatctcaggaacagatccataagattaggatcac 86  Q
    |||||||| |||||||| |||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  12493969 aaaatggcatacgctgcaatgaaaccaactaagcctggtttggaagaatctcaggaacagatccataagattaggatcac 12494048  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 21570231 - 21570306
Alignment:
Q  7 aaaatggcgtacgctgcgatgaaacccacgaagcctggtttggaggaatctcaggaacagatccataagattagga 82  Q
    |||||||| || ||||| ||||||||||  |||||||||||||| |||||||| ||||||||||||||||||||||    
T  21570231 aaaatggcatatgctgcaatgaaacccattaagcctggtttggaagaatctcatgaacagatccataagattagga 21570306  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 44218839 - 44218917
Alignment:
Q  7 aaaatggcgtacgctgcgatgaaacccacgaagcctggtttggaggaatctcaggaacagatccataagattaggatca 85  Q
    |||||||| || ||||| |||| |||||  |||||||||||| | ||||||||||||||||||||||||||||||||||    
T  44218839 aaaatggcatatgctgcaatgagacccattaagcctggtttgaaagaatctcaggaacagatccataagattaggatca 44218917  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 43 - 123
Target Start/End: Complemental strand, 33321070 - 33320990
Alignment:
Q  43 ggtttggaggaatctcaggaacagatccataagattaggatcaccctttcctccaagcatgtcaaaaatctcgagaagggt 123  Q
    ||||||||||| |||||||| |||||||| |||||||||||||| || ||||| ||||| ||| |||||||||||||||||    
T  33321070 ggtttggaggagtctcaggagcagatccacaagattaggatcactctctcctctaagcacgtccaaaatctcgagaagggt 33320990  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 371072 - 370994
Alignment:
Q  7 aaaatggcgtacgctgcgatgaaacccacgaagcctggtttggaggaatctcaggaacagatccataagattaggatca 85  Q
    |||||||| || | ||| ||||||||||  |||||||||||| | ||||||||||||||||||||||||||||||||||    
T  371072 aaaatggcatatgttgcaatgaaacccattaagcctggtttgaaagaatctcaggaacagatccataagattaggatca 370994  T

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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 43 - 123
Target Start/End: Complemental strand, 41196454 - 41196374
Alignment:
Q  43 ggtttggaggaatctcaggaacagatccataagattaggatcaccctttcctccaagcatgtcaaaaatctcgagaagggt 123  Q
    ||||||||||| |||||||| |||||||| |||||||||||||| || ||||| ||||| ||| |||||||||||||||||    
T  41196454 ggtttggaggagtctcaggagcagatccacaagattaggatcactctctcctctaagcacgtccaaaatctcgagaagggt 41196374  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 42962328 - 42962250
Alignment:
Q  7 aaaatggcgtacgctgcgatgaaacccacgaagcctggtttggaggaatctcaggaacagatccataagattaggatca 85  Q
    |||||||| || ||||| |||||| |||  |||||||||||  | ||||||||||||||||||||||||||||||||||    
T  42962328 aaaatggcatatgctgcaatgaaatccattaagcctggtttaaaagaatctcaggaacagatccataagattaggatca 42962250  T

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