View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4929_low_1 (Length: 1056)
Name: NF4929_low_1
Description: NF4929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4929_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 830; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 830; E-Value: 0
Query Start/End: Original strand, 13 - 991
Target Start/End: Original strand, 24949912 - 24950900
Alignment:
| Q |
13 |
tcatcattgagctagaccagaatgatcaaagccgagagctaagggcgaaatagcccgagacttgtaagtgttaaagtcattgtaagttgacttgtctgtt |
112 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24949912 |
tcatcattgagctagaccagaatgatcaaagccgagagctatgggcgaaatagccagagacttgtaagtgttaaagtcattgtaagttgacttgtctgtt |
24950011 |
T |
|
| Q |
113 |
ctgattcacttgattatccatttgtttctatcaccatcccaagcacactcgatgatctttcgagaataaagcatgaagtctgaaccttatgaagatttta |
212 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||| |
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| T |
24950012 |
ctgattcacttgattatccatttgtttctatcaccatcccaagcacactcgatgatctttcgagaataaagcacgaggtccgaaccttatgaagatttta |
24950111 |
T |
|
| Q |
213 |
gattttcattaagcatttgaatcgaaccggatgcaaat-aagaaacaggacaaactatagtctttgaaacataaacatgcatgacaacatcatgtgcgca |
311 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24950112 |
gattttcattaagcatttgaatcgaaccggatgcaactaaagaaacaggacaaactatagtctttgaaacataaacatgcatgacaacatcatgtgcgca |
24950211 |
T |
|
| Q |
312 |
taagtggtgctgaaacatcatagcagacaaacttagatgcctattcccatacattttctggtatgtctagaa---attggttatactgctnnnnnnnntc |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| || |
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| T |
24950212 |
taagtggtgctgaaacatcatagcagacaaacttagatgcctattcccatacattttctggtatgtctagaaattattggctatactgctaaaaaaaatc |
24950311 |
T |
|
| Q |
409 |
ttcatgaccttcgaatgcaacaataaacccttccatgggtttcttttgtccacgttcatagagaaaaagtaggcgacgatcatcaacaatctgtcaaaca |
508 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
24950312 |
ttcatgaccttcgaatgcaacaataaacccttccatgggtttcttttgtccacgttcatagataaaaagtaggcgacgatcatcaacaatctgtcaaaca |
24950411 |
T |
|
| Q |
509 |
caaacaactagatattagttggatgcattggcaacaaactagaagtgaccaaatgataagtggaatgagaaatatccaataacatgtgtataagttgaaa |
608 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24950412 |
caaacaactagatattagttggatgcattggcaacaaactaggagtgaccaaatgataagtggaatgagaaatatccaataacatgtgtataagttgaaa |
24950511 |
T |
|
| Q |
609 |
aatatcacctcaaagagaaaatcaactgaattcagagtagcatatttccactttaagagaccttcatgcgtgtgacgtacataaggatcgtcccatcgcc |
708 |
Q |
| |
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| T |
24950512 |
aatatcacctcaaagagaaaatcaactgaattcagagtagcatatttccactttaagagaccttcatgcgtgcaacgtacataaggatcgtcccatcgcc |
24950611 |
T |
|
| Q |
709 |
gatcataaacattgtcagtaacaacctccattcacttcagtaacacaaggg-nnnnnnngggaaagactctatagtagggaggaaataaatggaccaatg |
807 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
24950612 |
gatcataaacattgtcagtaacaacctccattcacttcagtaacacaagggaaagaaaaaggaaagactctatagtagggaggaaagaaatggaccaatg |
24950711 |
T |
|
| Q |
808 |
tatggttcatgattccggtggtcgatcacttctttctcaagcatcttccattgttcacagaaaggccgttgcttgaagtttgtaccacattaaccataaa |
907 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24950712 |
tatggttcatgattcctgtggtcgatcacttctttctcaagcatcttccattgttcacagaaaggccgttgcttgaagtttgtaccacattaaccataaa |
24950811 |
T |
|
| Q |
908 |
cttgttaataaggaaaaagaaacacaaattatcaaggttaaaaagtt-----agaagaaaagctatacaaacatttgaactcatgacta |
991 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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|
| T |
24950812 |
cttggtaataaggaaaaagaaacacaaattatcaaggttaaaaagttagaagagaagaaaagatatacaaacatttgaactcatgacta |
24950900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 407 - 759
Target Start/End: Original strand, 24367941 - 24368293
Alignment:
| Q |
407 |
tcttcatgaccttcgaatgcaacaataaacccttccatgggtttcttttgtccacgttcatagagaaaaagtaggcgacgatcatcaacaatctgtcaaa |
506 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||| |
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|
| T |
24367941 |
tcttcctgaccttcgaatgcaacaataaacccttccatgagtttcttttttccacgttcatagagaaaaagtagccggcgatcatcaacaatctgtcaaa |
24368040 |
T |
|
| Q |
507 |
cacaaacaactagatattagttggatgcattggcaacaaactagaagtgaccaaatgataagtggaatgagaaatatccaataacatgtgta-taagttg |
605 |
Q |
| |
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|||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||| |||||| |
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| T |
24368041 |
cacaaacagct-gatattagttggatgcatcggcaacaaactagaagtgaccaaatgataagtggaatgagaaatattcaatgacatgcgtaataagtta |
24368139 |
T |
|
| Q |
606 |
aaaaatatcacctcaaagagaaaatcaactgaattcagagtagcatatttccactttaagagaccttcatgcgtgtgacgtacataaggatcgtcccatc |
705 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| || || ||||||||||||||||||||| |
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| T |
24368140 |
aaaaatatcacctcaaagagaaaatcaactgaatttagagcagcatatttccactttaagagaccttcatgagtacgaggtacataaggatcgtcccatc |
24368239 |
T |
|
| Q |
706 |
gccgatcataaacattgtcagtaacaacctccattcacttcagtaacacaaggg |
759 |
Q |
| |
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| |||||||||||||||||| |||||||||||||||||| |||||||| |||| |
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|
| T |
24368240 |
cctgatcataaacattgtcagcaacaacctccattcactttagtaacacgaggg |
24368293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 135; E-Value: 8e-70
Query Start/End: Original strand, 73 - 363
Target Start/End: Original strand, 24367141 - 24367428
Alignment:
| Q |
73 |
cttgtaagtgttaaagtcattgtaagttgacttgtctgttctgattcacttgattatccatttgtttctatcaccatcccaagcacactcgatgatcttt |
172 |
Q |
| |
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||||||||| || ||||||||| ||||||||| |||||||||| || ||||| |||||||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
24367141 |
cttgtaagtatttaagtcattgggagttgacttatctgttctgactcgcttgaatatccattcgtttctatcaccatcccaagcacactcgatgattttt |
24367240 |
T |
|
| Q |
173 |
cgagaataaagcatgaagtctgaaccttatgaagattttagattttcattaagcatttgaatcgaaccggatgcaaat-aagaaacaggacaaactatag |
271 |
Q |
| |
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| ||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||| |||||| |||||| | || ||||||||||| ||| || |
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|
| T |
24367241 |
ccagaataaagcatggggtctgaaccttctgcagattttagattttcattaagcatttgaattgaaccgaatgcaactaaaaaaacaggacaagctacag |
24367340 |
T |
|
| Q |
272 |
tctttgaaacataaacatgcatgacaacatcatgtgcgcataagtggtgctgaaacatcatagcagacaaacttagatgcctattcccatac |
363 |
Q |
| |
|
||| |||| |||| ||||||||||||||| ||||| ||||| |||||||||||||| || ||||||||||| ||| |||||||||| |
|
|
| T |
24367341 |
acttcaaaacgtaaa----catgacaacatcatgcgcgcacaagtgttgctgaaacatcattacaaacaaacttagacgccaattcccatac |
24367428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 812 - 980
Target Start/End: Original strand, 24368919 - 24369084
Alignment:
| Q |
812 |
gttcatgattccggtggtcgatcacttctttctcaagcatcttccattgttcacagaaaggccgttgcttgaagtttgtaccacattaaccataaacttg |
911 |
Q |
| |
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|||||||||||| | | || |||||||||||||||||||||||||| | |||||||||||||| |||| || ||||||||| |||||||||||| ||| |
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|
| T |
24368919 |
gttcatgattcctgggttcaatcacttctttctcaagcatcttccaccgctcacagaaaggccgctgctccaaatttgtaccagattaaccataaatttg |
24369018 |
T |
|
| Q |
912 |
ttaataaggaaaaagaaacacaaattatcaaggttaaaaagttagaagaaaagctatacaaacatttga |
980 |
Q |
| |
|
||||||||| |||| || || |||||| | ||||| |||||||||||||||||||||||||||| |
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|
| T |
24369019 |
ttaataagg-aaaacaagcattgattatcgacaataaaa--ttagaagaaaagctatacaaacatttga |
24369084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 615 - 703
Target Start/End: Complemental strand, 4300321 - 4300233
Alignment:
| Q |
615 |
acctcaaagagaaaatcaactgaattcagagtagcatatttccactttaagagaccttcatgcgtgtgacgtacataaggatcgtccca |
703 |
Q |
| |
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|||||||| ||||| ||||||||||| | | | || ||||||||||||||||| |||||||| || | ||||||||||||| ||||| |
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| T |
4300321 |
acctcaaacagaaagtcaactgaatttaaattggcgtatttccactttaagagtccttcatgagtacgtggtacataaggatcatccca |
4300233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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