View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4929_low_2 (Length: 449)
Name: NF4929_low_2
Description: NF4929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4929_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 193 - 431
Target Start/End: Original strand, 1989318 - 1989556
Alignment:
| Q |
193 |
cactaatgggttcttatgaagcaaccaatgtggttcttgctaaagtcaaaaactttgaccctgaaaatgcttcaaaaatcatgggttttcttctaatgaa |
292 |
Q |
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| T |
1989318 |
cactaatgggttcttatgaagcaaccaatgtggttcttgctaaagtcaaaaactttgaccctgaaaatgcttcaaaaatcatgggttttcttctcatgaa |
1989417 |
T |
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| Q |
293 |
ccttgaagaatatgaacttgttcgtttagcatgttgtcctgaccatgttcttcataaccttgctattagggtaaagacccatttgggtatgaacctatct |
392 |
Q |
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| T |
1989418 |
ccttgaagaatatgaacttgttcgtttagcatgttgtcctgaccatgttcttcataaccttgctattagggtaaagacccatttgggtatgaacctatct |
1989517 |
T |
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| Q |
393 |
accccttcttcaccttcacctcttaaccctattggaaga |
431 |
Q |
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| T |
1989518 |
accccttcttcaccttcacctcttaaccctattggaaga |
1989556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 1989124 - 1989279
Alignment:
| Q |
1 |
gagagagtgagagtgtgagtgtgttgtgttgtttgtttcagcatatgtatagccaccaaaacctacggctactggtaaggtatgttgtaacagatatcaa |
100 |
Q |
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| T |
1989124 |
gagagagtgagagtgtgagtgtgttgtgttgtttgtttcagcatatgtatagccaccaaaacctacggctactggtaaggtatgttgtaacagatatcaa |
1989223 |
T |
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| Q |
101 |
caccatttcttgataccctttactctctttctagcatttgtcacttcaaaatttga |
156 |
Q |
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| T |
1989224 |
caccatttcttgataccctttactctctttctatcatttgtcacttcaaaatttga |
1989279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 286
Target Start/End: Original strand, 12080745 - 12080782
Alignment:
| Q |
249 |
gaccctgaaaatgcttcaaaaatcatgggttttcttct |
286 |
Q |
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| T |
12080745 |
gaccctgaaaatgcttcaaaaataatgggtttacttct |
12080782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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