View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4929_low_3 (Length: 411)
Name: NF4929_low_3
Description: NF4929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4929_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 11 - 393
Target Start/End: Original strand, 40522228 - 40522610
Alignment:
| Q |
11 |
atactcaattatgtgtagttgccaagagtgtaacttcagaaagaggagttgggattggcaagtttcgacagaggggacaagagaggtttaacctaaacca |
110 |
Q |
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| T |
40522228 |
atactcaattatgtgtagttgccaagagtgtaacttcagaaagaggagttgggattggcaagtttcgacagaggggacaagagaggtttgacctaaacca |
40522327 |
T |
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| Q |
111 |
tgcagcaatacagtccttatgaaaaaagtgaccacaatcaggtaagaaacgcaaccactctgaatctttataatctcccaaacaaattgagcaaatgagt |
210 |
Q |
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| T |
40522328 |
tgcagcaatacagtccttatgaaaaaagtgaccacaatcaggtaagaaacgcaaccactctaaatctttataatctcccaaacaaattgagcaaatgagt |
40522427 |
T |
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| Q |
211 |
gatgttgaatcatcaggcttatgaaacttgacttgggagtacaacaaaatggggtaactgttcggattaacgtctctttcttcttcacatacttcaatat |
310 |
Q |
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| T |
40522428 |
gatgttgaatcatcaggcttatgaaacttgacttgggagtacaacaaaatggggtaactgttcggattaacgtctctttcttcttcacatacttcaatat |
40522527 |
T |
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| Q |
311 |
tcacttcagtagtatgatctgtgttagaattgatgccactagattgcagcctgttttgccaataacatgaaaatagagacatg |
393 |
Q |
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| T |
40522528 |
tcacttcagtagtatgatctgtgttagaattgatgccactagattgcatcctgttttgccaataacatgaaaatagagacatg |
40522610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 58 - 269
Target Start/End: Original strand, 40526184 - 40526395
Alignment:
| Q |
58 |
gttgggattggcaagtttcgacagaggggacaagagaggtttaacctaaaccatgcagcaatacagtccttatgaaaaaagtgaccacaatcaggtaaga |
157 |
Q |
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| T |
40526184 |
gttgggagtggcgagtttcgacatagaggacatgagaggtttagcctgaaccatgtagcaatacagtccttatgaaaaaagtgaccacaatcaggtaaga |
40526283 |
T |
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| Q |
158 |
aacgcaaccactctgaatctttataatctcccaaacaaattgagcaaatgagtgatgttgaatcatcaggcttatgaaacttgacttgggagtacaacaa |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||| ||||||| ||| |
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| T |
40526284 |
aacgcaaccactctgaatctttataatctcccaaacaaattgagcaaatgagtgatgttgaatcagccttatgatgaaacttgacttgtgagtacagcaa |
40526383 |
T |
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| Q |
258 |
aatggggtaact |
269 |
Q |
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|| ||||||||| |
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| T |
40526384 |
aacggggtaact |
40526395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 393
Target Start/End: Original strand, 40526479 - 40526528
Alignment:
| Q |
344 |
tgccactagattgcagcctgttttgccaataacatgaaaatagagacatg |
393 |
Q |
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|||| |||||| |||| |||||||||| ||||||||||||||||||||| |
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| T |
40526479 |
tgcctctagatagcagtctgttttgccggtaacatgaaaatagagacatg |
40526528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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