View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4929_low_7 (Length: 272)
Name: NF4929_low_7
Description: NF4929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4929_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 32666738 - 32667005
Alignment:
| Q |
1 |
tcatcatacgccaataataagtcaatgcagctggaactgaaccaatcatcaatatcaacctccatgcaacgtcagcctccggcggcacatcaaaagccgt |
100 |
Q |
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| T |
32666738 |
tcatcatacgccaataataagtcaatgcagctggaactgaaccaatcatcaatatcaacctccatgcaacgtcagcctccggcggcacatcaaaagccgt |
32666837 |
T |
|
| Q |
101 |
tgccggcttcgaaccgctgcgaaataccaagcaaaccaccatagtaacagttgcactagccaatataccaaacccttgcatagaaaaaaccgcagctata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32666838 |
tgccggcttcgaaccgctgcgaaataccaagcaaaccaccatagtaacagttgcactagccaatataccaaacccttgcatagaaaaaaccgcagctata |
32666937 |
T |
|
| Q |
201 |
aaagaacctcttgtccttttatttgcaaactcagacataatggcagaagataaaggataatcaacacc |
268 |
Q |
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| T |
32666938 |
aaagaacctcttgtccttttattagcaaactcagacataatggtagaagataaaggataatcaccacc |
32667005 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 37315765 - 37315809
Alignment:
| Q |
158 |
agccaatataccaaacccttgcatagaaaaaaccgcagctataaa |
202 |
Q |
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| T |
37315765 |
agccaaaattccaaacccttgcatagcaaaaaccgaagctataaa |
37315809 |
T |
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