View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4929_low_8 (Length: 268)
Name: NF4929_low_8
Description: NF4929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4929_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 21 - 262
Target Start/End: Complemental strand, 1717696 - 1717455
Alignment:
| Q |
21 |
actttctctaagattcactctccttatttaaaactttgttaaccaattgaattacctactcgaagctgatttctttatacatgaattgaacttgtttaca |
120 |
Q |
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| T |
1717696 |
actttctctaagattcactctccttatttaaaactttgttaaccaaatgaattacctactcgaaactgatttctttatacatgaattgaacttgtttaca |
1717597 |
T |
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| Q |
121 |
gatacagtcatagaaaaagtttaggaggaatagagctgatgaataagccactaggtgtcaatctagatagcctgaagaactattacagggaagcttatga |
220 |
Q |
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| T |
1717596 |
gatacagtcatagaaaaagtttaggaggaatagagctgatgaatgagccactaggtgtcaatctagatagcttgaagaactattacagggaagcttatga |
1717497 |
T |
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| Q |
221 |
tgttgtgaggaaatacatcccaaatacttatgtgatgatgtc |
262 |
Q |
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| T |
1717496 |
tgttgtgaggaaatacatcccaaatacttatgtgatcatgtc |
1717455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 50 - 262
Target Start/End: Complemental strand, 1739164 - 1738952
Alignment:
| Q |
50 |
aaaactttgttaaccaattgaattacctactcgaagctgatttctttatacatgaattgaacttgtttacagatacagtcatagaaaaagtttaggagga |
149 |
Q |
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| T |
1739164 |
aaaacttagttcaccaaatgaattacctactcgaaactgatatctttatacatgaattgaacttgtttacagatataataatagaaaaagtttaggagga |
1739065 |
T |
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| Q |
150 |
atagagctgatgaataagccactaggtgtcaatctagatagcctgaagaactattacagggaagcttatgatgttgtgaggaaatacatcccaaatactt |
249 |
Q |
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| T |
1739064 |
atagagctgatgaatgagccacttggtgtcaatcaagatagcctcaagaactattacaagttagcttatgatgttgtgaggaaatacatcccaaatactt |
1738965 |
T |
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| Q |
250 |
atgtgatgatgtc |
262 |
Q |
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| T |
1738964 |
atgtgatcatgtc |
1738952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 86 - 262
Target Start/End: Complemental strand, 1754300 - 1754123
Alignment:
| Q |
86 |
ctgatttcttt-atacatgaattgaacttgtttacagatacagtcatagaaaaagtttaggaggaatagagctgatgaataagccactaggtgtcaatct |
184 |
Q |
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| T |
1754300 |
ctgatttctttgatacttgaattgaatttgtggacaggtatggtaatagaccaagtttaggaggaatagagttgatgaatgagccacaaggtgtcaatct |
1754201 |
T |
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| Q |
185 |
agatagcctgaagaactattacagggaagcttatgatgttgtgaggaaatacatcccaaatacttatgtgatgatgtc |
262 |
Q |
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| T |
1754200 |
agatagcctcaagaaatattacaaggaggcttatgatgcagtgaggaaatacaatccaaatgcttatgtgataatgtc |
1754123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 137 - 262
Target Start/End: Complemental strand, 1748932 - 1748807
Alignment:
| Q |
137 |
aagtttaggaggaatagagctgatgaataagccactaggtgtcaatctagatagcctgaagaactattacagggaagcttatgatgttgtgaggaaatac |
236 |
Q |
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| T |
1748932 |
aagtttaggaggaatagagctgatgaatgagccacaaggtgtcaatcttgatagtctcaagaagtattacaaggcagcttatgatgctgtgagaaaatac |
1748833 |
T |
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| Q |
237 |
atcccaaatacttatgtgatgatgtc |
262 |
Q |
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| |||| | |||||||||| ||||| |
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| T |
1748832 |
aacccagaggcttatgtgatcatgtc |
1748807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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