View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4930-Insertion-1 (Length: 1085)
Name: NF4930-Insertion-1
Description: NF4930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4930-Insertion-1 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-159; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 390 - 743
Target Start/End: Original strand, 43232045 - 43232410
Alignment:
| Q |
390 |
atataagacctctacttgatatttgttacacacagaaagctaaattgggattctcttggaagatgatttagaattcaaaatttcaaatctattgtgtgtg |
489 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
43232045 |
atatgagacctctacttgatatttgttacacacagaaagctaaattgggattctcttggaagatgatgcagaattcaaaatttcaaatctattgtgtgtg |
43232144 |
T |
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| Q |
490 |
tgtaaatgccttcatgatcccttattacatacttatttaggttgacttgatttttaatccacttcaactcgatttgtct------------tctctctta |
577 |
Q |
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| T |
43232145 |
tgtaaatgccttcatgatcccttattacatacttatttacgttgacttgatttttaatccacttcaactcgttttgtcttctctaaaaccctctctctta |
43232244 |
T |
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| Q |
578 |
tctaaccctctccatctttattttccttctttactacaccttcttcagaggtaaggtttgtttcatttattttcacccttgttttcttgtatacataccg |
677 |
Q |
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|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
43232245 |
tctaaccccctccatctttattttccttctttactacaacttcttcagaggtaaggtttgtttcatttattttcacccttgttttgttgtatacataccc |
43232344 |
T |
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| Q |
678 |
tttatttataagtttgtgttatgtttttatttctcctttttccttcttaaagctgcagtcttataa |
743 |
Q |
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| T |
43232345 |
tttatttataagtttgtgttatgtttttatttctcttttttccttcttaaagctgcagtcttataa |
43232410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 7 - 269
Target Start/End: Original strand, 43231708 - 43231970
Alignment:
| Q |
7 |
ataaagtgtggcaacagtgctataattagcnnnnnnnngttctattctagtggaaattatcaggttgacgaaccagtaagatccatttgtcgggcattaa |
106 |
Q |
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| T |
43231708 |
ataaagtgtggcaacagtgctataattagcaaaaaaaagttctattctagtggaaattatcaggttgacgagccagtaagatccatttgttgggcattaa |
43231807 |
T |
|
| Q |
107 |
tgaaataacttttggttttatttatcatttcccaagtgtgtatatcttgaaaggtgctcaatgccgtttcaaataatttgaatgttttgaatgatgtcga |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43231808 |
tgaaataacttttggttttatttatcatttcccaagtgtgtatagcttgaaaggtgctcaatgccgtttcaaataatttgaatgtttcgaatgatgtcga |
43231907 |
T |
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| Q |
207 |
caaacaattggaaaggaaactgctctatgcgccttttaattactcacaactctccaaaatgcc |
269 |
Q |
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| T |
43231908 |
caaacaattggaaaggaaactgctctatgcgccttttaatcactcacaactctccagaatgcc |
43231970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 872 - 1022
Target Start/End: Original strand, 43233167 - 43233324
Alignment:
| Q |
872 |
tgttggagaaa-caatgattcaa-tagagcaaagtataaggagtgggaaaagttggcagtgtcaccctttcaaattaaatttgggatgcaagtttgttta |
969 |
Q |
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||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
43233167 |
tgttggagaaaacaatgattcaaatagagcaaagtataaggagtgggaaaagttggcagtgtcaccctttca----aaatttcggatgcaagtttgttta |
43233262 |
T |
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| Q |
970 |
ggtgtc--atatcagc----atacatagaggattacca--tttg-ttactcatatgtttcaa |
1022 |
Q |
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|||||| |||||||| |||||||||||||||||| |||| ||||||||||||||||| |
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| T |
43233263 |
ggtgtccaatatcagcagcaatacatagaggattaccaattttgtttactcatatgtttcaa |
43233324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 345 - 394
Target Start/End: Original strand, 43231969 - 43232018
Alignment:
| Q |
345 |
ccaaaaccataatatcatattatgtttacgggtcatcttacttgtatata |
394 |
Q |
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| T |
43231969 |
ccaaaaccataatatcatattatgtttatgggtcatcttacttgtatata |
43232018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 765 - 808
Target Start/End: Original strand, 43233060 - 43233103
Alignment:
| Q |
765 |
agtttttcatattcttgagcttgaatctcattgttaaattactc |
808 |
Q |
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| T |
43233060 |
agtttttcatattcttgagcttgaatctcattgttaaattactc |
43233103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 892 - 940
Target Start/End: Original strand, 31982592 - 31982640
Alignment:
| Q |
892 |
aatagagcaaagtataaggagtgggaaaagttggcagtgtcaccctttc |
940 |
Q |
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| T |
31982592 |
aatagagtaacgtataaagagtgggaaaagtaggcagtgtcaccctttc |
31982640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 892 - 940
Target Start/End: Original strand, 8023547 - 8023595
Alignment:
| Q |
892 |
aatagagcaaagtataaggagtgggaaaagttggcagtgtcaccctttc |
940 |
Q |
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||||||| || |||||| ||||||||||||| ||||||||||||||||| |
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| T |
8023547 |
aatagagtaacgtataaagagtgggaaaagtaggcagtgtcaccctttc |
8023595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 892 - 940
Target Start/End: Original strand, 18646773 - 18646821
Alignment:
| Q |
892 |
aatagagcaaagtataaggagtgggaaaagttggcagtgtcaccctttc |
940 |
Q |
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||||||| || |||||| ||||||||||||| ||||||||||||||||| |
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| T |
18646773 |
aatagagtaacgtataaagagtgggaaaagtaggcagtgtcaccctttc |
18646821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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