View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4930-Insertion-2 (Length: 681)
Name: NF4930-Insertion-2
Description: NF4930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4930-Insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 462; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 8 - 481
Target Start/End: Complemental strand, 3641727 - 3641254
Alignment:
| Q |
8 |
gatccagctagaagtctgcaaaacaaaaaccaatgcacttcagaaataaacacaatcacttagagaataacatacaatcacttgataaacagtacgtaaa |
107 |
Q |
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| T |
3641727 |
gatccagctagaagtctgcaaaacaaaaaccaatgcacttcagaaataaacacaatcacttagagaataacatacaatcacttgataaacagtacgtaaa |
3641628 |
T |
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| Q |
108 |
caggaaaatatcaagaggtctgtttttgtacgaaattgaaggactgaagagtaaatcttgaccttaactatacatttcttttttacatgaaaggtcaaaa |
207 |
Q |
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| T |
3641627 |
caggaaaatatcaagaggtctgtttttgtacgaaattgaaggactgaagagtaaatcttgaccttaactatacatttcttttttacatgaaaggtcaaaa |
3641528 |
T |
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| Q |
208 |
ttaagtagtttgttgacatatatcttctctcaagacatttctgattttactacctgcactctgacatttctaaaatcggttctttaagttcatgtcatta |
307 |
Q |
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| T |
3641527 |
ttaagtagtttgttgacatatatcttctctcaagacatttctgattttactacctgcactctgacatttctaaaatcggttctttaagttcatgtcatta |
3641428 |
T |
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| Q |
308 |
atcttcgattttttacactaatataacaattgaaatactcatcatttgcatggatggaatataaatatttagaacttaattatatttatgcctcactctc |
407 |
Q |
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| T |
3641427 |
atcttcgattttttacactaatataacaattgaaatactcatcatttgcatggatggaatataaatatttaggacttaattatatttatgcctcactctc |
3641328 |
T |
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| Q |
408 |
atatgagagattcattataaagagcagaattctcaagcatgctaatgcacgaccaataatattcttcctggtac |
481 |
Q |
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| T |
3641327 |
atatgagagattcattataaagagcagaattctcaagcatgctaatgcacgaccaatagcattcttcctggtac |
3641254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 530 - 681
Target Start/End: Complemental strand, 3641204 - 3641053
Alignment:
| Q |
530 |
ctacttaccataataggaatatcccgctccaaagcacaggacttcaggtgacgtgatatcgtggccttttcttcaactacaatagctcccatcaaagtcc |
629 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3641204 |
ctacttaccataataggaatatcccgctccaaagcacaggacttcaggtgacgtgatatcgtggccttttcttcaactacaatagctcccatcaaagtcc |
3641105 |
T |
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| Q |
630 |
tttcttcatcggtgctccgaactaaccattgaagagttttgaacgcccgtcc |
681 |
Q |
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| T |
3641104 |
tttcttcatcggtgctccgaactaaccattgaagagttttgaacgcccgtcc |
3641053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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