View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4930_high_1 (Length: 406)
Name: NF4930_high_1
Description: NF4930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4930_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 21 - 389
Target Start/End: Complemental strand, 6857645 - 6857277
Alignment:
| Q |
21 |
agaagaatgtcaaggtgaagagagagagaagggttaccggaaagagaggtggatatgaaggtgaaaatggaggtgggaaaaggacacgtgtcagttttgg |
120 |
Q |
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| T |
6857645 |
agaagaatgtcaaggtgaagagagagagaagggttaccggaatgagaggtggatatgaaggtgaaaatggaggtgggaaaaggacacgtgtcagttttgg |
6857546 |
T |
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| Q |
121 |
attagagtgnnnnnnnagtattttgtttgtccgagaaagaaagaaagtaatagtgacgtgtttatccttatccattgtttgttgttggattgagttttaa |
220 |
Q |
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| T |
6857545 |
attagagtgtttttttagtattttgtttgtccgagaaagaaagaaagtaatagtgacgtgtttatccttatccattgtttgttgttggattgagttttaa |
6857446 |
T |
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| Q |
221 |
tacatcgtgatgaatactatgtaaatcactcgtatgtttctatttttggacaatataaatttcattacaagccacctaaagctttatttgtgaatctgat |
320 |
Q |
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| T |
6857445 |
tacatcgtgatgaatactatgtaaatcactcgtatgtttctatttttggacaatataaatttcattacaagctacctaaagctttatttgtgaatctgat |
6857346 |
T |
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| Q |
321 |
tttgattttactttcttttctctaagattaatgttcaattgaaactagagtttaaagattttagttcat |
389 |
Q |
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| T |
6857345 |
tttgattttactttcttttctctaagattaatgttcaattgaaactagagtttaatgattttagttcat |
6857277 |
T |
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