View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4930_low_2 (Length: 305)
Name: NF4930_low_2
Description: NF4930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4930_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 20283392 - 20283100
Alignment:
| Q |
1 |
tttctccaattacgtcgtcactatatcaaacatctgatgatccatctttattaaattgttggaaagctttgttgttctttttccttgctgatttagtaaa |
100 |
Q |
| |
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||||||||||||||||||||||| | |||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||| | | |
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| T |
20283392 |
tttctccaattacgtcgtcactagaacaaacatctgatgatccacctttgttaaattgttggaaagctttgttgttcttcttccttgctgatttagcaga |
20283293 |
T |
|
| Q |
101 |
gttccacagtttagctgcaacggaaacaaataatttgagcctaattcctcattaatagaaagtaaattttacggctcaagctgaatataagaatatagta |
200 |
Q |
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|| |||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||| || |||||| |
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| T |
20283292 |
gtgccacagtttagctgcagcggaaacaaataatttgagcttagttcctcattaatagaaagtaaattttatggctcaagctgaatatacaaaaatagta |
20283193 |
T |
|
| Q |
201 |
agttacccgggtggtttgttgtccttctccacaggatatatgcacagataacaattatgagggttccaattatgaccgtacttacaatgatga |
293 |
Q |
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||||||| ||||||||| ||||||||||||||| |||||||||||| |||||||||| || ||||||||||| |||||||||||||| |||| |
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| T |
20283192 |
agttacctgggtggtttcttgtccttctccacatgatatatgcacatataacaattagtagagttccaattataaccgtacttacaattatga |
20283100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 20278813 - 20278521
Alignment:
| Q |
1 |
tttctccaattacgtcgtcactatatcaaacatctgatgatccatctttattaaattgttggaaagctttgttgttctttttccttgctgatttagtaaa |
100 |
Q |
| |
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||||||||||||||| ||||||| |||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20278813 |
tttctccaattacgttgtcactaggagaaacatttggtgatccacctttattaaattgttggaaagctttgttgttctttttccttgctgatttagtaaa |
20278714 |
T |
|
| Q |
101 |
gttccacagtttagctgcaacggaaacaaataatttgagcctaattcctcattaatagaaagtaaattttacggctcaagctgaatataagaatatagta |
200 |
Q |
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| |||| ||||||||||| ||||||||||||||||||| || || |||||||||||||||||||||||| ||||||| ||||||||| ||| ||| || |
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| T |
20278713 |
gagccactgtttagctgcagtggaaacaaataatttgagcttagtttctcattaatagaaagtaaattttatggctcaatctgaatatacgaaaatatta |
20278614 |
T |
|
| Q |
201 |
agttacccgggtggtttgttgtccttctccacaggatatatgcacagataacaattatgagggttccaattatgaccgtacttacaatgatga |
293 |
Q |
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||||||||||||||||| | ||||||||||||| |||||||||||| |||||||||| || |||||||||||||| |||||||||||||||| |
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| T |
20278613 |
agttacccgggtggtttttcgtccttctccacaagatatatgcacaaataacaattactagagttccaattatgactgtacttacaatgatga |
20278521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 20273078 - 20272787
Alignment:
| Q |
1 |
tttctccaattacgtcgtcactatatcaaacatctgatgatccatctttattaaattgttggaaagctttgttgttctttttccttgctgatttagtaaa |
100 |
Q |
| |
|
||||||||||||||| ||||||| |||||| || ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20273078 |
tttctccaattacgttgtcactaggagaaacatttggtgatccacctatattaaattgttggaaagctttgttgttctttttccttgctgatttagtaaa |
20272979 |
T |
|
| Q |
101 |
gttccacagtttagctgcaacggaaacaaataatttgagcctaattcctcattaatagaaagtaaattttacggctcaagctgaatataagaatatagta |
200 |
Q |
| |
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|||||||||||||||| | |||| | | ||| || || ||||||||| ||||||||||| ||||| | |||||| |||||| ||| | ||| |
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| T |
20272978 |
aagccacagtttagctgcagtgaaaac--acagtttaagtatagttcctcatttatagaaagtaagttttatgactcaagttgaatactcgaaagtggta |
20272881 |
T |
|
| Q |
201 |
agttacccgggtggtttgttgtccttctccacaggatatatgcacagataacaattatgagggttccaattatgaccgtacttacaatgatgat |
294 |
Q |
| |
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||||| ||||||||| ||||||||||| | |||||||||||| |||| |||||||| | |||| ||| || ||||||| ||||||||| |
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| T |
20272880 |
tattacctgggtggtttcccgtccttctccaaatgatatatgcacaaataagaattatgatagagccaactatcactgtacttaaaatgatgat |
20272787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 64 - 273
Target Start/End: Original strand, 20168958 - 20169162
Alignment:
| Q |
64 |
aagctttgttgttctttttccttgctgatttagtaaagttccacagtttagctgcaacggaaacaaataatttgagcctaattcctcattaatagaaagt |
163 |
Q |
| |
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||||||||||| |||||||||||||||||||| | |||| || || |||||||| | ||||| | ||||||||||| || |||||||| ||| |||||| |
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| T |
20168958 |
aagctttgttgctctttttccttgctgatttaatgaagtgccgcaatttagctgtagtggaaa-acataatttgagcttagttcctcatcaatggaaagt |
20169056 |
T |
|
| Q |
164 |
aaattttacggctcaagctgaatataagaatatagtaagttacccgggtggtttgttgtccttctccacaggatatatgcacagataacaattatgaggg |
263 |
Q |
| |
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| | | | || ||| |||||| | || || ||| || | |||||||||| |||||||||||| | ||||||||||||||| ||||| ||||||| |
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| T |
20169057 |
a----tgatgactaaagttgaatacatgatgattgtataatatctgggtggtttgatgtccttctccagaagatatatgcacagatgacaatcatgaggg |
20169152 |
T |
|
| Q |
264 |
ttccaattat |
273 |
Q |
| |
|
|||||||||| |
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| T |
20169153 |
ttccaattat |
20169162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 130 - 283
Target Start/End: Complemental strand, 20263242 - 20263089
Alignment:
| Q |
130 |
ataatttgagcctaattcctcattaatagaaagtaaattttacggctcaagctgaatataagaatatagtaagttacccgggtggtttgttgtccttctc |
229 |
Q |
| |
|
|||| |||||| || |||||||| |||| || |||||||||| | | ||| |||||||| ||| ||||||||||||| |||||||||| || ||||||| |
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| T |
20263242 |
ataacttgagcttagttcctcatcaatataaggtaaattttatgacctaagttgaatatacgaaaatagtaagttacctgggtggtttgatgaccttctc |
20263143 |
T |
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| Q |
230 |
cacaggatatatgcacagataacaattatgagggttccaattatgaccgtactt |
283 |
Q |
| |
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||| |||||||||||| || || || || || ||| ||||||| || |||||| |
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| T |
20263142 |
cacgtgatatatgcacaaatgacgataataagagttgcaattatcactgtactt |
20263089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 130 - 231
Target Start/End: Complemental strand, 20242749 - 20242648
Alignment:
| Q |
130 |
ataatttgagcctaattcctcattaatagaaagtaaattttacggctcaagctgaatataagaatatagtaagttacccgggtggtttgttgtccttctc |
229 |
Q |
| |
|
|||| |||||| || |||||||| ||||||| |||||||||| | || ||| |||||||| ||| ||||||||||||| | |||||||| | |||||||| |
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| T |
20242749 |
ataacttgagcttagttcctcatcaatagaaggtaaattttatgactaaagttgaatatatgaaaatagtaagttacctgagtggtttgatatccttctc |
20242650 |
T |
|
| Q |
230 |
ca |
231 |
Q |
| |
|
|| |
|
|
| T |
20242649 |
ca |
20242648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 20293802 - 20293744
Alignment:
| Q |
61 |
ggaaagctttgttgttctttttccttgctgatttagtaaagttccacagtttagctgca |
119 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||| | |||| |||||||||||||||| |
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|
| T |
20293802 |
ggaaagctttgttgttctttttctttgcagatttaatgaagtgccacagtttagctgca |
20293744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 117
Target Start/End: Original strand, 20063379 - 20063450
Alignment:
| Q |
46 |
ctttattaaattgttggaaagctttgttgttctttttccttgctgatttagtaaagttccacagtttagctg |
117 |
Q |
| |
|
||||||||||| |||||||| |||| |||||| ||||||||| |||||| || ||| |||||||||||||| |
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|
| T |
20063379 |
ctttattaaatagttggaaatctttcttgttcgttttccttgttgattttatagagtgccacagtttagctg |
20063450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 20288478 - 20288426
Alignment:
| Q |
33 |
tctgatgatccatctttattaaattgttggaaagctttgttgttctttttcct |
85 |
Q |
| |
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||||||| |||| |||||||||| ||||||||||||| ||||||||||||| |
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|
| T |
20288478 |
tctgatgttccaactttattaaagaattggaaagctttgatgttctttttcct |
20288426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 292
Target Start/End: Complemental strand, 20293656 - 20293568
Alignment:
| Q |
204 |
tacccgggtggtttgttgtccttctccacaggatatatgcacagataacaattatgagggttccaattatgaccgtacttacaatgatg |
292 |
Q |
| |
|
|||| |||||||||| |||||| |||| || ||||||||| || |||||||| || ||||||||||| || ||||||| ||||||| |
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| T |
20293656 |
tacctgggtggtttgatgtcctcttccagcagaaatatgcacatatgacaattataagagttccaattattactgtacttataatgatg |
20293568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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