View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4930_low_4 (Length: 283)

Name: NF4930_low_4
Description: NF4930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4930_low_4
NF4930_low_4
[»] chr7 (15 HSPs)
chr7 (97-271)||(20283352-20283526)
chr7 (46-263)||(20278781-20279000)
chr7 (19-263)||(20273046-20273279)
chr7 (99-254)||(20168772-20168927)
chr7 (46-256)||(20230806-20231019)
chr7 (46-256)||(20263261-20263474)
chr7 (50-256)||(20242768-20242977)
chr7 (124-254)||(20293839-20293969)
chr7 (128-224)||(20063231-20063327)
chr7 (109-241)||(20302963-20303095)
chr7 (109-243)||(20006020-20006154)
chr7 (104-230)||(20288511-20288637)
chr7 (128-240)||(19938311-19938423)
chr7 (128-240)||(19969450-19969562)
chr7 (109-254)||(20089896-20090041)
[»] chr4 (1 HSPs)
chr4 (108-230)||(40824501-40824623)


Alignment Details
Target: chr7 (Bit Score: 159; Significance: 1e-84; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 97 - 271
Target Start/End: Complemental strand, 20283526 - 20283352
Alignment:
Q  97 ttgcatgtaaggtaccttgtatactataccaaaaccaccctgtccaagtttgttggataagtggaagttgtttgtggcagttgcaatcttttcaaaatcc 196  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  20283526 ttgcatttaaggtaccttgtatactataccaaaaccaccctatccaagtttgttggataagtggaagttgtttgtggcagttgcaatcttttcaaaatca 20283427  T
Q  197 aatattaatagctcttgtagtctaacttgggacatttctccaattacgtcgtcactagaacaaacatctgatgat 271  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20283426 aatattaatatctcttgtagtctaacttgggacatttctccaattacgtcgtcactagaacaaacatctgatgat 20283352  T

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Target: chr7; HSP #2
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 46 - 263
Target Start/End: Complemental strand, 20279000 - 20278781
Alignment:
Q  46 aaaatattatgtgacaacaac--tagacaatggctttaaaatatttataattattgcatgtaaggtaccttgtatactataccaaaaccaccctgtccaa 143  Q
    |||||||||||||||||||||  |||||| |  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  20279000 aaaatattatgtgacaacaacaatagacagtaactttaaaatatttataattgttgcatgtaaggtaccttgtatactataccaaaaccaccctgtccaa 20278901  T
Q  144 gtttgttggataagtggaagttgtttgtggcagttgcaatcttttcaaaatccaatattaatagctcttgtagtctaacttgggacatttctccaattac 243  Q
    ||||||||||||||||||||||||| ||||||||||| |  || |||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||    
T  20278900 gtttgttggataagtggaagttgttagtggcagttgccaatttctcaaaatcaaatattaatagctcttgcagtttaacttgggacatttctccaattac 20278801  T
Q  244 gtcgtcactagaacaaacat 263  Q
    || |||||||| | ||||||    
T  20278800 gttgtcactaggagaaacat 20278781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 19 - 263
Target Start/End: Complemental strand, 20273279 - 20273046
Alignment:
Q  19 gttacaacatctataaacaatggctataaaatattatgtgacaacaactagacaatggctttaaaatatttataattattgcatgtaaggtaccttgtat 118  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||           |||||||||||||||||||||| |||||| |||||||||||||||    
T  20273279 gttacaacagctataaacaatggttataaaatattatgtgacaa-----------tggctttaaaatatttataattgttgcatttaaggtaccttgtat 20273191  T
Q  119 actataccaaaaccaccctgtccaagtttgttggataagtggaagttgtttgtggcagttgcaatcttttcaaaatccaatattaatagctcttgtagtc 218  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||  || |||||||| |||||||||| |||||| |||     
T  20273190 actataccaaaaccaccctgtccaagtttgttggacaagtggaagttgttagtggcagttgcaagtttctcaaaatcaaatattaataactcttgcagtt 20273091  T
Q  219 taacttgggacatttctccaattacgtcgtcactagaacaaacat 263  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||    
T  20273090 taacttgggacatttctccaattacgttgtcactaggagaaacat 20273046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 99 - 254
Target Start/End: Original strand, 20168772 - 20168927
Alignment:
Q  99 gcatgtaaggtaccttgtatactataccaaaaccaccctgtccaagtttgttggataagtggaagttgtttgtggcagttgcaatcttttcaaaatccaa 198  Q
    |||| |||||||||||||||||   |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||| ||    
T  20168772 gcatttaaggtaccttgtatacgggaccaaaaccaccttgtccaagtttgttggaaaagtggaagttgtttgtggcagttgcaagtttttcaaaatcaaa 20168871  T
Q  199 tattaatagctcttgtagtctaacttgggacatttctccaattacgtcgtcactag 254  Q
    | ||||||||||||||||| | | ||| ||||||||||||||||||| ||| ||||    
T  20168872 ttttaatagctcttgtagtttgatttgcgacatttctccaattacgttgtcgctag 20168927  T

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Target: chr7; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 46 - 256
Target Start/End: Complemental strand, 20231019 - 20230806
Alignment:
Q  46 aaaatattatgtgacaacaactagaca--atggctttaaaatatttataa--ttattgcatgtaaggtaccttgtatactataccaaaaccaccctgtcc 141  Q
    |||||||||||||||||||| || |||  |||| |||||| |||| ||||  || |||||| ||||||||||| |||||   ||||||||||||||||||    
T  20231019 aaaatattatgtgacaacaattatacacaatggttttaaagtatt-ataactttgttgcatttaaggtaccttatatacgggaccaaaaccaccctgtcc 20230921  T
Q  142 aagtttgttggataagtggaagttgtttgtggcagttgcaatcttttcaaaatccaatattaatagctcttgtagtctaacttgggacatttctccaatt 241  Q
    ||||||||| || | ||  ||||||||||||||||||||||  ||||||||||| ||| ||||||||||||||||| || ||||||||||||||||||||    
T  20230920 aagtttgttagacaggtcaaagttgtttgtggcagttgcaactttttcaaaatcaaattttaatagctcttgtagtttatcttgggacatttctccaatt 20230821  T
Q  242 acgtcgtcactagaa 256  Q
    | || |||| |||||    
T  20230820 atgttgtcattagaa 20230806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 46 - 256
Target Start/End: Complemental strand, 20263474 - 20263261
Alignment:
Q  46 aaaatattatgtgacaacaactag--acaatggctttaaaatatttataa--ttattgcatgtaaggtaccttgtatactataccaaaaccaccctgtcc 141  Q
    |||||||||||||| ||||||||   ||||||| ||||||||||| ||||  || || |||||||||||||||||||||   ||||||||||||||| ||    
T  20263474 aaaatattatgtgaaaacaactatccacaatggttttaaaatatt-ataactttgttacatgtaaggtaccttgtatacgggaccaaaaccaccctgacc 20263376  T
Q  142 aagtttgttggataagtggaagttgtttgtggcagttgcaatcttttcaaaatccaatattaatagctcttgtagtctaacttgggacatttctccaatt 241  Q
    |||||| || || ||||  ||||||||||||||||||||||  |||| |||||| ||| |||||| |||||||||| || ||||||||||||||||||||    
T  20263375 aagtttatttgacaagtcaaagttgtttgtggcagttgcaactttttgaaaatcaaattttaataactcttgtagtttatcttgggacatttctccaatt 20263276  T
Q  242 acgtcgtcactagaa 256  Q
    | || ||||||||||    
T  20263275 atgttgtcactagaa 20263261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 50 - 256
Target Start/End: Complemental strand, 20242977 - 20242768
Alignment:
Q  50 tattatgtgacaacaactagaca--atggctttaaaatatttataattatt--gcatgtaaggtaccttgtatactataccaaaaccaccctgtccaagt 145  Q
    |||||||||| |||||||| |||  |||| ||||||||||  |||| ||||  |||| ||||| |||||||||||   ||||||||||||||||||||||    
T  20242977 tattatgtgataacaactatacacaatggttttaaaatatc-ataactatttagcatttaaggcaccttgtatacgggaccaaaaccaccctgtccaagt 20242879  T
Q  146 ttgttggataagtggaagttgtttgtggcagttgcaatcttttcaaaatccaatattaatagctcttgtagtctaacttgggacatttctccaattacgt 245  Q
    ||||| || | ||  ||||||||||||||||||||||  ||||||||||| ||| ||||||||||||||||| || |||| |||||||||||||||| ||    
T  20242878 ttgtttgacaggtcaaagttgtttgtggcagttgcaactttttcaaaatcaaattttaatagctcttgtagtttatcttgcgacatttctccaattatgt 20242779  T
Q  246 cgtcactagaa 256  Q
     ||||||||||    
T  20242778 tgtcactagaa 20242768  T

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Target: chr7; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 124 - 254
Target Start/End: Complemental strand, 20293969 - 20293839
Alignment:
Q  124 accaaaaccaccctgtccaagtttgttggataagtggaagttgtttgtggcagttgcaatcttttcaaaatccaatattaatagctcttgtagtctaact 223  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||| | |||||  ||||||||||| ||| ||||||||||||||||| | |||    
T  20293969 accaaaaccaccctgtccaagtttgttggaaaagtgaaagttgtttgtggcggctgcaagtttttcaaaatcaaattttaatagctcttgtagtttgact 20293870  T
Q  224 tgggacatttctccaattacgtcgtcactag 254  Q
    |||||||||||||||||| ||| ||||||||    
T  20293869 tgggacatttctccaattgcgttgtcactag 20293839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 128 - 224
Target Start/End: Original strand, 20063231 - 20063327
Alignment:
Q  128 aaaccaccctgtccaagtttgttggataagtggaagttgtttgtggcagttgcaatcttttcaaaatccaatattaatagctcttgtagtctaactt 224  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||    
T  20063231 aaaccaccctgtccaagtttgttggacaagtggaaattgtttgtggcagttgcaagcttttcaaaatcaaataataatagctcttgtagtctaactt 20063327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 109 - 241
Target Start/End: Complemental strand, 20303095 - 20302963
Alignment:
Q  109 taccttgtatactataccaaaaccaccctgtccaagtttgttggataagtggaagttgtttgtggcagttgcaatcttttcaaaatccaatattaatagc 208  Q
    |||||||||||||  ||| ||||||||||  |||||||||||||| |||||||||||||||||||||||||||| |||| | ||||| |||| ||| |||    
T  20303095 taccttgtatactggaccgaaaccaccctcgccaagtttgttggacaagtggaagttgtttgtggcagttgcaagctttccgaaatcaaatactaacagc 20302996  T
Q  209 tcttgtagtctaacttgggacatttctccaatt 241  Q
    || |||||| |||||||||| | | ||||||||    
T  20302995 tcctgtagtttaacttgggaaaatcctccaatt 20302963  T

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Target: chr7; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 109 - 243
Target Start/End: Original strand, 20006020 - 20006154
Alignment:
Q  109 taccttgtatactataccaaaaccaccctgtccaagtttgttggataagtggaagttgtttgtggcagttgcaatcttttcaaaatccaatattaatagc 208  Q
    ||||||||||||   ||||||||| || |||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||    ||| |||||||    
T  20006020 taccttgtatacaggaccaaaacctccttgtccaagtttgttggataaatggaagttgtttgtggcaattgcaagcttttcaaaactatatagtaatagc 20006119  T
Q  209 tcttgtagtctaacttgggacatttctccaattac 243  Q
    ||||||||  |  |||| |||| ||||||||||||    
T  20006120 tcttgtagctttgcttgtgacagttctccaattac 20006154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 104 - 230
Target Start/End: Complemental strand, 20288637 - 20288511
Alignment:
Q  104 taaggtaccttgtatactataccaaaaccaccctgtccaagtttgttggataagtggaagttgtttgtggcagttgcaatcttttcaaaatccaatatta 203  Q
    |||||||||||||||||   |||||||||||| || |||||||| |||||  |||||||||||||||||||| |||||| | |||||||||| |||| ||    
T  20288637 taaggtaccttgtatacaggaccaaaaccaccttgcccaagtttattggacgagtggaagttgtttgtggcaattgcaagcctttcaaaatcaaatagta 20288538  T
Q  204 atagctcttgtagtctaacttgggaca 230  Q
    | | ||| || ||| ||||||| ||||    
T  20288537 acaactcctggagtttaacttgtgaca 20288511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 128 - 240
Target Start/End: Complemental strand, 19938423 - 19938311
Alignment:
Q  128 aaaccaccctgtccaagtttgttggataagtggaagttgtttgtggcagttgcaatcttttcaaaatccaatattaatagctcttgtagtctaacttggg 227  Q
    ||||| ||||| ||||||||||||||| |||| |||||||| || |||||||||| |||  ||||||  |||| |||||||||||| ||| ||||||| |    
T  19938423 aaacctccctgcccaagtttgttggatgagtgaaagttgttggttgcagttgcaagcttgccaaaattaaatagtaatagctcttggagtttaacttgtg 19938324  T
Q  228 acatttctccaat 240  Q
    ||| |||||||||    
T  19938323 acagttctccaat 19938311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 128 - 240
Target Start/End: Complemental strand, 19969562 - 19969450
Alignment:
Q  128 aaaccaccctgtccaagtttgttggataagtggaagttgtttgtggcagttgcaatcttttcaaaatccaatattaatagctcttgtagtctaacttggg 227  Q
    ||||| ||||| ||||||||||||||| |||| |||||||| || |||||||||| |||  ||||||  |||| |||||||||||| ||| ||||||| |    
T  19969562 aaacctccctgcccaagtttgttggatgagtgaaagttgttggttgcagttgcaagcttgccaaaattaaatagtaatagctcttggagtttaacttgtg 19969463  T
Q  228 acatttctccaat 240  Q
    ||| |||||||||    
T  19969462 acagttctccaat 19969450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 109 - 254
Target Start/End: Original strand, 20089896 - 20090041
Alignment:
Q  109 taccttgtatactataccaaaaccaccctgtccaagtttgttggataagtggaagttgtttgtggcagttgcaatcttttcaaaatccaatattaatagc 208  Q
    |||||||||||||| ||||||||||| || ||||||||||||||| |||  |||||| ||||||||| ||  || ||||  |||| | |||| ||||| |    
T  20089896 taccttgtatactagaccaaaaccactctctccaagtttgttggacaaggcgaagttctttgtggcaattttaagctttcgaaaaccaaatagtaataac 20089995  T
Q  209 tcttgtagtctaacttgggacatttctccaattacgtcgtcactag 254  Q
    || |||| | || |||| |||| || |||||||| |||||||||||    
T  20089996 tcctgtaatttagcttgcgacagttttccaattatgtcgtcactag 20090041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 108 - 230
Target Start/End: Original strand, 40824501 - 40824623
Alignment:
Q  108 gtaccttgtatactataccaaaaccaccctgtccaagtttgttggataagtggaagttgtttgtggcagttgcaatcttttcaaaatccaatattaatag 207  Q
    |||||||||||||   |||||||||||||||||||||||| |||||  | | |||||||||||||||| |||||| |||||||||||| |||| ||| ||    
T  40824501 gtaccttgtatacaggaccaaaaccaccctgtccaagtttattggacgaatagaagttgtttgtggcaattgcaagcttttcaaaatcaaatagtaacag 40824600  T
Q  208 ctcttgtagtctaacttgggaca 230  Q
    ||| || ||| ||||||| ||||    
T  40824601 ctcctggagtttaacttgtgaca 40824623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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