View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4930_low_5 (Length: 226)
Name: NF4930_low_5
Description: NF4930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4930_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 7304268 - 7304047
Alignment:
| Q |
1 |
ccgtcgagcgtaagcatttttacgtagcattgactaaagtccgtccctctgtgtcagaaaaggtatgtttcattcttctaaatttctttcatgcatgaaa |
100 |
Q |
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| T |
7304268 |
ccgtcgagcgtaagcatttttacgtagcattgactaaagtccatccctctgtgtcagaaaaggtatgtttcattcttctaaatttctttcatgcatgaaa |
7304169 |
T |
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| Q |
101 |
tctaatacatttctgtcctac---attagtcttagaaatatatattgaaatttattctgatttttggagcagcaaatgaagtactatgatcgtgtttcca |
197 |
Q |
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| T |
7304168 |
tctaatacatttctgtcctacattattagtcttagaaatatatattgaaatttattctgatttttggagcagcaaatgaagtactatgatcgtgtttcca |
7304069 |
T |
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| Q |
198 |
agaaacttaaaggtgatgatgt |
219 |
Q |
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||||||||||||||| |||||| |
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| T |
7304068 |
agaaacttaaaggtggtgatgt |
7304047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 7295111 - 7295018
Alignment:
| Q |
14 |
gcatttttacgtagcattgactaaagtccgtccctctgtgtcagaaaaggtatgtttcattcttctaaatttctttcatgcatgaaatctaata |
107 |
Q |
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| T |
7295111 |
gcattttgaggtagcactgactaaagtctctccgtctgtgtcagaaatggtatggttcattcttttaaatctctttcatgcatgaaatctaata |
7295018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 7295014 - 7294957
Alignment:
| Q |
129 |
ttagaaatatatattgaaatttattctgatttttggagcagcaaatgaagtactatga |
186 |
Q |
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| T |
7295014 |
ttagaaatttatagtcaaatttattctgatttttggagcagcaaaggaagtactatga |
7294957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 39336577 - 39336629
Alignment:
| Q |
122 |
attagtcttagaaatatatattgaaatttattctgatttttggagcagcaaat |
174 |
Q |
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|||||| |||||||| ||||| ||||||||| |||||||||||||||||||| |
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| T |
39336577 |
attagttttagaaatttatatcgaaatttatattgatttttggagcagcaaat |
39336629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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