View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4931-Insertion-2 (Length: 972)
Name: NF4931-Insertion-2
Description: NF4931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4931-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 506; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 6 - 534
Target Start/End: Complemental strand, 52771150 - 52770621
Alignment:
| Q |
6 |
cattctcaaatcaaacctcagcagcagcatcaaatgctaccggatggcttgcagttttgggtttgatactgtatatagcttttttctcccctgggatggg |
105 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52771150 |
cattctcaaatcaaacctcggcagcagcatcaaatgctaccggatggcttgcagttttgggtttgatactgtatatagcttttttctcccctgggatggg |
52771051 |
T |
|
| Q |
106 |
accagtgccgtgggcaatgaactcagagatatatcctaaagaatatagaggaatttgtggtggtatgtcagctactgtgtgttgggtttccaatctcatt |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52771050 |
accagtgccgtgggcaatgaactcagagatatatcctaaagaatatagaggaatttgtggtggtatgtcagctactgtgtgttgggtttccaatctcatt |
52770951 |
T |
|
| Q |
206 |
gtgtctcagacatttctttctgttgctgaagctttagggactggtcctactttcttgattcttgctgtaataaccgtgcttgcctttttatttgtgcttc |
305 |
Q |
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| T |
52770950 |
gtgtctcagacatttctttctgttgctgaagctttagggactggtcctactttcttgattcttgctgtaataaccgtgcttgcctttttatttgtgcttc |
52770851 |
T |
|
| Q |
306 |
tctatgttccggagactaaaggattgacctttgacgaggttgaactaatatggaaagagagagcttggggcggcaccaacattaacaataactctgactc |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
52770850 |
tctatgttccggagactaaaggattgacctttgacgaggttgaactaatatggaaagagagagcttggggcggcaccaacattaacaacaactctgactc |
52770751 |
T |
|
| Q |
406 |
gcgaaaccttcttgggacggacaatgatcaataatgtagatag-aaaattctttactatcctatcaaaataacacacagaaaatttgtaaggaattttta |
504 |
Q |
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| T |
52770750 |
gcgaaaccttcttgggacggacaatgatcaataatgtagatagcagaattctttactatcctatcaaaataacacacagaaaatttgtaaggaatttttg |
52770651 |
T |
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| Q |
505 |
tagttttgagcattgaggaagaaaatgttg |
534 |
Q |
| |
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| T |
52770650 |
tagttttgagcattgaggaagaaaatgttg |
52770621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 583 - 874
Target Start/End: Complemental strand, 52770623 - 52770331
Alignment:
| Q |
583 |
ttgaagcaatgcaaattagattactaaaactgagtaaatgtcaagaataagatagaa---aacttagctcaaaactagaaaatttattttcaataaaaat |
679 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
52770623 |
ttgaagcaatgcaaattagattactaaaactgagtaaatgtcaagaataagatagaagaaaacttagctcaaaactagaaaatttattttcaatcaaaat |
52770524 |
T |
|
| Q |
680 |
tctctctatttaagtattggaaactttactagcaacttagtaattcactgactagtggtatggttatggtattctttgttgttgacttattggaacatga |
779 |
Q |
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| T |
52770523 |
tctctctattttagtattggaaactttactagcaactttgtaattcactgactagtggtatgg-tatggtattctttgttgttgacttattggaacatga |
52770425 |
T |
|
| Q |
780 |
aaagaagtttaggaatggtatgacggtgatgtttgacaataactgtggtggcagtgaagatctgatgtaaaagcactgtatatgatgtcaattgt |
874 |
Q |
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| T |
52770424 |
aaggaagtttaggaatggtatgacggtgatg-ttgacaataactgtggcggcagtgaagatctgatgtaaaagcactatatatgatgtcaattgt |
52770331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 880 - 972
Target Start/End: Complemental strand, 52770266 - 52770173
Alignment:
| Q |
880 |
cacagaaaatttgaatgtatgcagttggtcttaatgagatataa-aaaatggacaagtaagaaaaacagtagttaggatggtgtgatcatgtat |
972 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
52770266 |
cacagaaaatttgaatgtatgcagttggtcttaatgagatataaaaaaatggacaagtaagaaaaacagtagttagaatgtgttgatcatgtat |
52770173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 47 - 271
Target Start/End: Complemental strand, 52767145 - 52766921
Alignment:
| Q |
47 |
ggatggcttgcagttttgggtttgatactgtatatagcttttttctcccctgggatgggaccagtgccgtgggcaatgaactcagagatatatcctaaag |
146 |
Q |
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||||||||||| ||| | |||||| || ||||| || |||||||| || |||||||| || |||||||||||| | ||||| || ||||||| | | |
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| T |
52767145 |
ggatggcttgcggttgttggtttggccctatatattgcatttttctcgccagggatggggcctgtgccgtgggcagtaaactctgaagtatatccgcagg |
52767046 |
T |
|
| Q |
147 |
aatatagaggaatttgtggtggtatgtcagctactgtgtgttgggtttccaatctcattgtgtctcagacatttctttctgttgctgaagctttagggac |
246 |
Q |
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| || ||||||| ||||| || ||||||||||||||| |||| |||| ||| | |||||| ||||| |||||||||| |||| |||||| |||||| |
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| T |
52767045 |
agtaccgaggaatgtgtggagggatgtcagctactgtgaattggatttcaaatttgattgtggctcagtcatttctttccattgcagaagctgcagggac |
52766946 |
T |
|
| Q |
247 |
tggtcctactttcttgattcttgct |
271 |
Q |
| |
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||||||||| |||||| |||||||| |
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| T |
52766945 |
tggtcctacattcttgcttcttgct |
52766921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 125 - 376
Target Start/End: Original strand, 392778 - 393029
Alignment:
| Q |
125 |
aactcagagatatatcctaaagaatatagaggaatttgtggtggtatgtcagctactgtgtgttgggtttccaatctcattgtgtctcagacatttcttt |
224 |
Q |
| |
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|||||||||||||||||| |||||||| |||| || ||||| || ||| |||| || ||||||||| |||| ||| | || ||||| ||| ||||||| |
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| T |
392778 |
aactcagagatatatcctgaagaatatcgaggtatatgtgggggcatggcagcgaccgtgtgttggatttcaaatttgatcgtgtccgagagctttcttt |
392877 |
T |
|
| Q |
225 |
ctgttgctgaagctttagggactggtcctactttcttgattcttgctgtaataaccgtgcttgcctttttatttgtgcttctctatgttccggagactaa |
324 |
Q |
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| T |
392878 |
cgattgctgacgctatcgggattgcttcaactttcttgattattgctgttatagctgtggtggcatttctctttgtacttctgtatgttccagagactca |
392977 |
T |
|
| Q |
325 |
aggattgacctttgacgaggttgaactaatatggaaagagagagcttggggc |
376 |
Q |
| |
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|||||| || ||||| || || || |||||||||| |||||||| |||||| |
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| T |
392978 |
aggattaacgtttgatgaagtggagttaatatggaaggagagagcctggggc |
393029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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