View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4931-Insertion-3 (Length: 630)

Name: NF4931-Insertion-3
Description: NF4931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4931-Insertion-3
NF4931-Insertion-3
[»] chr2 (2 HSPs)
chr2 (89-354)||(43875684-43875949)
chr2 (139-354)||(36595789-36596004)
[»] chr3 (3 HSPs)
chr3 (89-354)||(33506859-33507124)
chr3 (356-542)||(45069338-45069524)
chr3 (16-88)||(45069273-45069345)
[»] chr7 (2 HSPs)
chr7 (89-354)||(13050358-13050623)
chr7 (93-354)||(48359844-48360105)
[»] chr4 (2 HSPs)
chr4 (85-354)||(25943240-25943509)
chr4 (88-354)||(13150431-13150697)
[»] chr8 (1 HSPs)
chr8 (89-334)||(13002352-13002600)


Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 89 - 354
Target Start/End: Complemental strand, 43875949 - 43875684
Alignment:
Q  89 gagcaatgctatatggtacggttaatttcacgtacgaaaactgacggatacacacatgtctagttttaaaggaataaaaaacagatttagtatgctggaa 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43875949 gagcaatgctatatggtacggttaatttcacgtacgaaaactgacgaatacacacatgtctagttttaaaggaataaaaaacagatttagtatgctggaa 43875850  T
Q  189 cacaaatcatggggtagtagcaattaaagcttgacgatcatcgcttgaattaatactaaaaatatttactttacggaatacatggtggtacgacattcaa 288  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43875849 cacaaatcatggggtagtagcaattaaagcttgacaatcatcacttgaattaatactaaaaatatttactttacggaatacatggtggtacgacattcaa 43875750  T
Q  289 agtgtaagcaataaacataattcgtaacttttcgtagttatcatcccgtactatccatcattaccc 354  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  43875749 agtgtaagcaataaacagaattcgtagcttttcgtagttatcatcccgtactatccatcattaccc 43875684  T

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Target: chr2; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 139 - 354
Target Start/End: Original strand, 36595789 - 36596004
Alignment:
Q  139 cacacatgtctagttttaaaggaataaaaaa-cagatttagtatgctggaacacaaatcatggggtagtagcaattaaagcttgacgatcatcgcttgaa 237  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||| ||||||    
T  36595789 cacaaatgtctagttttaaaggaataaaaaatcagatttagtatgctggaacacaaatcatggggcagtggcaattaaagcttgacaatcatcacttgaa 36595888  T
Q  238 ttaatactaaaaatatttactttacggaatacatggtggtacgacattcaaagtgtaagcaataaacataattcgtaacttttcgtagttatcatcccgt 337  Q
    | ||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||| |||| |||||||| |||||||||||||   ||||||    
T  36595889 t-aatactaaaaatacttactttacggaatacatggtggtacggcattcaaagtataagcaattaacagaattcgtagcttttcgtagttacattcccgt 36595987  T
Q  338 actatccatcattaccc 354  Q
    || || |||||||||||    
T  36595988 accattcatcattaccc 36596004  T

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Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 89 - 354
Target Start/End: Original strand, 33506859 - 33507124
Alignment:
Q  89 gagcaatgctatatggtacggttaatttcacgtacgaaaactgacggatacacacatgtctagttttaaaggaataaaaaacagatttagtatgctggaa 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  33506859 gagcaatgctatatggtacggttaatttcacgtacgaaaactgacgaatgcacacatgtttagttttaaaggaataaaaaacagatttagtatgctggaa 33506958  T
Q  189 cacaaatcatggggtagtagcaattaaagcttgacgatcatcgcttgaattaatactaaaaatatttactttacggaatacatggtggtacgacattcaa 288  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33506959 cacaaatcatggggtagtagcaattaaagcttgacaatcatcacttgaattaatactaaaaatatttactttacggaatacatggtggtacgacattcaa 33507058  T
Q  289 agtgtaagcaataaacataattcgtaacttttcgtagttatcatcccgtactatccatcattaccc 354  Q
    ||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||    
T  33507059 agtgtaagcaataaacagaattcgtagcttttcgtagttaccatcccgtactatccatcattaccc 33507124  T

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Target: chr3; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 356 - 542
Target Start/End: Original strand, 45069338 - 45069524
Alignment:
Q  356 attcaaaaaggcatccaaaattgttaaatagaattttttcgaaaaggaaaatgataaatagaattgagagtcaagtttctaattattggtcaaaatagtc 455  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  45069338 attcaaaaaggcattcaaaattgttaaatggaattttttcgaaaaggaaaatgataaatagaattaagagtcaagtttctaattattggtcaaaatagtc 45069437  T
Q  456 tctcattttggtaaaccggtagatatatactcttgctgaaaatagtaaagtgattggtaaattagtttctatgtaatctatcgatcc 542  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45069438 tctcattttggtaaactggtagatatatactcttgctgaaaatagtaaagtgattggtaaattagtttctatgtaatctatcgatcc 45069524  T

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Target: chr3; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 45069273 - 45069345
Alignment:
Q  16 agacaatctctactattattaacattgatgatgaattgatgactatttaccaatatccatcatatattcaaaa 88  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45069273 agacaaactctactgttattaacattgatgatgaattgatgactatttaccaatatccatcatatattcaaaa 45069345  T

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Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 89 - 354
Target Start/End: Original strand, 13050358 - 13050623
Alignment:
Q  89 gagcaatgctatatggtacggttaatttcacgtacgaaaactgacggatacacacatgtctagttttaaaggaataaaaaacagatttagtatgctggaa 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13050358 gagcaatgctatatggtacggttaatttcacgtacgaaaactgacgaatgcacacatgtctagttttaaaggaataaaaaacagatttagtatgctggaa 13050457  T
Q  189 cacaaatcatggggtagtagcaattaaagcttgacgatcatcgcttgaattaatactaaaaatatttactttacggaatacatggtggtacgacattcaa 288  Q
    ||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13050458 cacaaatcatggggtagtagcaattaaagtttgacaatcatcacttgaattaatactaaaaatatttactttacggaatacatggtggtacggcattcaa 13050557  T
Q  289 agtgtaagcaataaacataattcgtaacttttcgtagttatcatcccgtactatccatcattaccc 354  Q
    ||||||||||||||| |||||||||| ||||| ||||||| |||||||||||||||||||||||||    
T  13050558 agtgtaagcaataaatataattcgtagctttttgtagttaccatcccgtactatccatcattaccc 13050623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 93 - 354
Target Start/End: Complemental strand, 48360105 - 48359844
Alignment:
Q  93 aatgctatatggtacggttaatttcacgtacgaaaactgacggatacacacatgtctagttttaaaggaataaaaaacagatttagtatgctggaacaca 192  Q
    |||| ||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  48360105 aatgttatatggtacggttaatttcacgtacgaaaactgacgaatgcacacatgtctaattttaaaggaataaaaaacagatttagtatgctggaacaca 48360006  T
Q  193 aatcatggggtagtagcaattaaagcttgacgatcatcgcttgaattaatactaaaaatatttactttacggaatacatggtggtacgacattcaaagtg 292  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  48360005 aatcatggggtagtagcaattaaagcttgacaatcatcacttgaattaatactaaaaatatttactttacggaatacatggtggtacggcattcaaagtg 48359906  T
Q  293 taagcaataaacataattcgtaacttttcgtagttatcatcccgtactatccatcattaccc 354  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  48359905 taagcaataaacagaattcgtagcttttcgtagttatcatcccgtactatccatcattaccc 48359844  T

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Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 85 - 354
Target Start/End: Complemental strand, 25943509 - 25943240
Alignment:
Q  85 aaaagagcaatgctatatggtacggttaatttcacgtacgaaaactgacggatacacacatgtctagttttaaaggaataaaaaa-cagatttagtatgc 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||| ||||||||||||||    
T  25943509 aaaagagcaatgctatatggtacggttaatttcacgtacgaaaactgacgaatgcacaaatgtctagttttaaaggaataaaaaatcagatttagtatgc 25943410  T
Q  184 tggaacacaaatcatggggtagtagcaattaaagcttgacgatcatcgcttgaattaatactaaaaatatttactttacggaatacatggtggtacgaca 283  Q
     |||||||||||||||||| ||| |||||||||||||||| |||||| ||||||| |||||| |||||| ||||||||||||||||||||||||||||||    
T  25943409 cggaacacaaatcatggggcagtggcaattaaagcttgacaatcatcacttgaat-aatactgaaaatacttactttacggaatacatggtggtacgaca 25943311  T
Q  284 ttcaaagtgtaagcaataaacataattcgtaacttttcgtagttatcatcccgtactatccatcattaccc 354  Q
    ||||||||||||||||| |||| |||||||| ||||||||||||| |||||||||| ||||||||||||||    
T  25943310 ttcaaagtgtaagcaattaacagaattcgtagcttttcgtagttaccatcccgtaccatccatcattaccc 25943240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 88 - 354
Target Start/End: Original strand, 13150431 - 13150697
Alignment:
Q  88 agagcaatgctatatggtacggttaatttcacgtacgaaaactgacggatacacacatgtctagttttaaaggaataaaaaa-cagatttagtatgctgg 186  Q
    |||||||||||||||| |||| ||||||||||||| ||||||||||| || |||| |||||||||||||||||||||||||| |||||||||||||||||    
T  13150431 agagcaatgctatatgttacgattaatttcacgtatgaaaactgacgaatgcacaaatgtctagttttaaaggaataaaaaatcagatttagtatgctgg 13150530  T
Q  187 aacacaaatcatggggtagtagcaattaaagcttgacgatcatcgcttgaattaatactaaaaatatttactttacggaatacatggtggtacgacattc 286  Q
    |||||||||||||||| ||| |||||||||||||||| |||||| ||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||    
T  13150531 aacacaaatcatggggcagtggcaattaaagcttgacaatcatcacttgaat-aatactaaaaatacttactttacagaatacatggtggtacgacattc 13150629  T
Q  287 aaagtgtaagcaataaacataattcgtaacttttcgtagttatcatcccgtactatccatcattaccc 354  Q
    |||||||||||||| |||| |||||||| ||||||||||||| |||| ||||| ||||||||||||||    
T  13150630 aaagtgtaagcaattaacagaattcgtagcttttcgtagttaccatctcgtaccatccatcattaccc 13150697  T

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Target: chr8 (Bit Score: 164; Significance: 2e-87; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 89 - 334
Target Start/End: Original strand, 13002352 - 13002600
Alignment:
Q  89 gagcaatgctatatggtacggttaatttcacgtacgaaaactgacggatacacacatgtctagttttaaaggaataaaaaac-agatttagtatgctgga 187  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  13002352 gagcaatgctatatggtacgattaatttcacgtacgaaaactgacgaatgcacaaatgtctagttttaaaggaataaaaaaccagatttagtatgctgga 13002451  T
Q  188 acacaaatcatggggtagtagcaattaaagcttgacgatcatcg---cttgaattaatactaaaaatatttactttacggaatacatggtggtacgacat 284  Q
    ||||||||||||||| ||| |||||||||||||||| ||||||    ||||||| ||| ||||||||| |||||||| ||||||||||||||||||||||    
T  13002452 acacaaatcatggggcagtggcaattaaagcttgacaatcatcatcacttgaat-aatgctaaaaatacttactttatggaatacatggtggtacgacat 13002550  T
Q  285 tcaaagtgtaagcaataaacataattcgtaacttttcgtagttatcatcc 334  Q
    |||||||||||||||| ||||||||||||| ||||||||||||| |||||    
T  13002551 tcaaagtgtaagcaattaacataattcgtagcttttcgtagttaccatcc 13002600  T

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