View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4931-Insertion-4 (Length: 561)

Name: NF4931-Insertion-4
Description: NF4931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4931-Insertion-4
NF4931-Insertion-4
[»] chr6 (7 HSPs)
chr6 (7-559)||(31076076-31076629)
chr6 (310-429)||(31040267-31040386)
chr6 (428-492)||(31091382-31091446)
chr6 (337-426)||(31072449-31072538)
chr6 (452-495)||(31040224-31040267)
chr6 (331-408)||(31115314-31115391)
chr6 (336-408)||(31073908-31073980)
[»] chr8 (1 HSPs)
chr8 (331-424)||(33559631-33559724)
[»] chr4 (3 HSPs)
chr4 (513-553)||(47386643-47386683)
chr4 (7-150)||(1982820-1982961)
chr4 (513-553)||(21954862-21954901)
[»] chr1 (3 HSPs)
chr1 (37-109)||(9022516-9022588)
chr1 (512-553)||(705509-705550)
chr1 (501-553)||(25983786-25983837)
[»] chr3 (2 HSPs)
chr3 (29-73)||(27305790-27305834)
chr3 (80-108)||(53921931-53921959)


Alignment Details
Target: chr6 (Bit Score: 470; Significance: 0; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 7 - 559
Target Start/End: Complemental strand, 31076629 - 31076076
Alignment:
Q  7 aatcatgtcatgatt-cgtaacatacgatctaaggtacacaaatcttatgcacaaattgtatcacgatggccacaaatcgtgtcacgattttcctccaaa 105  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||    
T  31076629 aatcatgtcatgatttcgtaacatacgatctaaggtacacaaatcttatgcacaaatcgtgtcacgatagccacaaatcgtgtcacgattttcctccaaa 31076530  T
Q  106 aaactccatgttcattgcctatgaaatcgtgtcacgccatccaaattgtcaaaacaattacaactgatagaacaataataatgtacaatgcacatgcgat 205  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  31076529 aaactccatgttcattgcctataaaatcgtgtcacgccatccaaattatcaaaacaattacaactgataggacaataataatgtataatgcacatgcgat 31076430  T
Q  206 agtgaactaatttcatcaataactagtttctttcacaaattcacaaatttgaagacacttacaactgatataacaataataatgtataatgcacatgcga 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||    
T  31076429 agtgaactaatttcatcaataactagtttctttcacaaattcacaaatttgaagacacttacaactgatagaataataataatgtacaatgcacatgcga 31076330  T
Q  306 aagtgaactaatttcatcaataaccagtttctttaaattattccaaattgaacttgttaattggttatttatggcatgttttattttaagcaaaacttgt 405  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |    
T  31076329 aagtgaactaatttcatcaataaccaatttctttaaattattccaaattgaacttgttaattggttatttatagcatgttttattttaagcaaaacttct 31076230  T
Q  406 ttagcttttgatagtggatttagatttaagtttaactttgtcgtataactgagatcaagactaagacacatacacaataatatactataacatattccct 505  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  31076229 ttagcttttgatagtggatttagatttaagtttaactttgtcgtataactaagatcaagactaagacacatacacaataatatactataacatattctct 31076130  T
Q  506 ctgttctataataagtgagtcatttgcaaaagaaaacattgtcccaaatttttt 559  Q
    |  |||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  31076129 cgattctataataagggagtcatttgcaaaagaaaatattgtcccaaatttttt 31076076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 310 - 429
Target Start/End: Complemental strand, 31040386 - 31040267
Alignment:
Q  310 gaactaatttcatcaataaccagtttctttaaattattccaaattgaacttgttaattggttatttatggcatgttttattttaagcaaaacttgtttag 409  Q
    ||||||||||| |||||||| |||||||||||||||||| ||||||||| ||||||| | |||||||||||| |||||||| |||||||||||||||||     
T  31040386 gaactaatttcctcaataactagtttctttaaattattctaaattgaacgtgttaatagattatttatggcaggttttattgtaagcaaaacttgtttat 31040287  T
Q  410 cttttgatagtggatttaga 429  Q
    |||||||| |||||||||||    
T  31040286 cttttgattgtggatttaga 31040267  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 428 - 492
Target Start/End: Original strand, 31091382 - 31091446
Alignment:
Q  428 gatttaagtttaactttgtcgtataactgagatcaagactaagacacatacacaataatatacta 492  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||  |||||||||||| ||||    
T  31091382 gatttaaggttaaatttgtcgtataactgagatcaagactaagacatgtacacaataataaacta 31091446  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 337 - 426
Target Start/End: Complemental strand, 31072538 - 31072449
Alignment:
Q  337 tttaaattattccaaattgaacttgttaattggttatttatggcatgttttattttaagcaaaacttgtttagcttttgatagtggattt 426  Q
    ||||| |||||||||| ||||| ||||||| | |||  ||| |||  |||||||||||||| |||||||||| |||||| ||||||||||    
T  31072538 tttaagttattccaaaatgaacatgttaatagattagctattgcaaattttattttaagcataacttgtttatcttttggtagtggattt 31072449  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 452 - 495
Target Start/End: Complemental strand, 31040267 - 31040224
Alignment:
Q  452 aactgagatcaagactaagacacatacacaataatatactataa 495  Q
    ||||||||||||||| ||||||| |||| |||||||||||||||    
T  31040267 aactgagatcaagaccaagacacgtacataataatatactataa 31040224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 408
Target Start/End: Original strand, 31115314 - 31115391
Alignment:
Q  331 agtttctttaaattattccaaattgaacttgttaattggttatttatggcatgttttattttaagcaaaacttgttta 408  Q
    |||||||||||||||||||||| ||||| | ||||| | |||  |||| || | ||||||||||||| ||| ||||||    
T  31115314 agtttctttaaattattccaaaatgaacattttaatagattagctatgacaagctttattttaagcataacatgttta 31115391  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 336 - 408
Target Start/End: Complemental strand, 31073980 - 31073908
Alignment:
Q  336 ctttaaattattccaaattgaacttgttaattggttatttatggcatgttttattttaagcaaaacttgttta 408  Q
    |||||||||||||||||   ||| ||||||| | ||| |||||||| ||| ||||||||||| || |||||||    
T  31073980 ctttaaattattccaaaactaacgtgttaatagattagttatggcaagttatattttaagcataagttgttta 31073908  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 331 - 424
Target Start/End: Complemental strand, 33559724 - 33559631
Alignment:
Q  331 agtttctttaaattattccaaattgaacttgttaattggttatttatggcatgttttattttaagcaaaacttgtttagcttttgatagtggat 424  Q
    |||||||||||||||||||||| ||||| ||||||| | |||  |||||||  |||||||||||||| |||||||||| |||||| ||||||||    
T  33559724 agtttctttaaattattccaaaatgaacgtgttaatagattagctatggcaaattttattttaagcataacttgtttatcttttggtagtggat 33559631  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 513 - 553
Target Start/End: Complemental strand, 47386683 - 47386643
Alignment:
Q  513 ataataagtgagtcatttgcaaaagaaaacattgtcccaaa 553  Q
    |||||||||||||||||||||||| |||| |||||||||||    
T  47386683 ataataagtgagtcatttgcaaaaaaaaatattgtcccaaa 47386643  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 150
Target Start/End: Complemental strand, 1982961 - 1982820
Alignment:
Q  7 aatcatgtcatgattcgtaacatacgatctaaggtacacaaatcttatgcacaaattgtatcacgatggccacaaatcgtgtcacgattttcctccaaaa 106  Q
    |||| ||||| |||||||||| ||||| | |||||||| ||| ||||| || ||||||| |||||||||    ||||| |||||||||||| | ||| |     
T  1982961 aatcgtgtcacgattcgtaacgtacgacccaaggtaca-aaaccttatccaaaaattgtgtcacgatggatcaaaatcttgtcacgattttacaccagag 1982863  T
Q  107 aactccatgttcattgcctatgaaatcgtgtcacgccatccaaa 150  Q
    ||  ||||||||  |||| | ||||||||||||||||| |||||    
T  1982862 aaa-ccatgttctatgccaacgaaatcgtgtcacgccacccaaa 1982820  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 513 - 553
Target Start/End: Complemental strand, 21954901 - 21954862
Alignment:
Q  513 ataataagtgagtcatttgcaaaagaaaacattgtcccaaa 553  Q
    |||||||||||||||||||||||| |||| |||||||||||    
T  21954901 ataataagtgagtcatttgcaaaa-aaaatattgtcccaaa 21954862  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 9022588 - 9022516
Alignment:
Q  37 aaggtacacaaatcttatgcacaaattgtatcacgatggccacaaatcgtgtcacgattttcctccaaaaaac 109  Q
    |||||||  ||||||||| || ||||||| ||||||||||   |||||||||||||||||| | |||||||||    
T  9022588 aaggtacgaaaatcttatccaaaaattgtgtcacgatggctcaaaatcgtgtcacgattttacaccaaaaaac 9022516  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 512 - 553
Target Start/End: Complemental strand, 705550 - 705509
Alignment:
Q  512 tataataagtgagtcatttgcaaaagaaaacattgtcccaaa 553  Q
    |||||||||||| |||||||||||| |||| |||||||||||    
T  705550 tataataagtgaatcatttgcaaaaaaaaaaattgtcccaaa 705509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 501 - 553
Target Start/End: Complemental strand, 25983837 - 25983786
Alignment:
Q  501 tccctctgttctataataagtgagtcatttgcaaaagaaaacattgtcccaaa 553  Q
    |||||| || ||||||||||||||||||||| |||| |||| |||||||||||    
T  25983837 tccctccgtcctataataagtgagtcatttggaaaa-aaaatattgtcccaaa 25983786  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 27305790 - 27305834
Alignment:
Q  29 tacgatctaaggtacacaaatcttatgcacaaattgtatcacgat 73  Q
    ||||||| |||||||||||||||||| ||||||| || |||||||    
T  27305790 tacgatccaaggtacacaaatcttatccacaaatcgtgtcacgat 27305834  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 80 - 108
Target Start/End: Original strand, 53921931 - 53921959
Alignment:
Q  80 aaatcgtgtcacgattttcctccaaaaaa 108  Q
    |||||||||||||||||||||||||||||    
T  53921931 aaatcgtgtcacgattttcctccaaaaaa 53921959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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