View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4931-Insertion-5 (Length: 159)
Name: NF4931-Insertion-5
Description: NF4931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4931-Insertion-5 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 2e-78; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 2e-78
Query Start/End: Original strand, 8 - 159
Target Start/End: Complemental strand, 29424038 - 29423887
Alignment:
| Q |
8 |
cataattccttcaatcgttccttaatccttcgacacaactctgatttctaccaaatcaacgatttctctaacctaactaccgccgttaaactcaatcctc |
107 |
Q |
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| T |
29424038 |
cataattccttcaatcgttccttaatccttcgacacaactctgatttctaccaaatcaacgatttctctaacctaactaccgccgttaaactcaatcctc |
29423939 |
T |
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| Q |
108 |
ctttcaaaagctccaacaacttcatctctctggtcggatcatgtaacggcct |
159 |
Q |
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| T |
29423938 |
ctttcaaaggctccaacaacttcatctctctggtcggatcatgtaacggcct |
29423887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 2e-50
Query Start/End: Original strand, 11 - 159
Target Start/End: Original strand, 29467153 - 29467301
Alignment:
| Q |
11 |
aattccttcaatcgttccttaatccttcgacacaactctgatttctaccaaatcaacgatttctctaacctaactaccgccgttaaactcaatcctcctt |
110 |
Q |
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| T |
29467153 |
aattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcctt |
29467252 |
T |
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| Q |
111 |
tcaaaagctccaacaacttcatctctctggtcggatcatgtaacggcct |
159 |
Q |
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| T |
29467253 |
tcaaaatccccaacaacttcatctctctgttcggttcatgtaacggcct |
29467301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 3e-43
Query Start/End: Original strand, 11 - 159
Target Start/End: Original strand, 29452679 - 29452827
Alignment:
| Q |
11 |
aattccttcaatcgttccttaatccttcgacacaactctgatttctaccaaatcaacgatttctctaacctaactaccgccgttaaactcaatcctcctt |
110 |
Q |
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| T |
29452679 |
aattccctcaatcgttccttaatccttcgacacaactctgttttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcctt |
29452778 |
T |
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| Q |
111 |
tcaaaagctccaacaacttcatctctctggtcggatcatgtaacggcct |
159 |
Q |
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| T |
29452779 |
tcaaactccccaacaacaacatctctctgttcagttcatgtaacggcct |
29452827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 7e-29
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 29442694 - 29442778
Alignment:
| Q |
18 |
tcaatcgttccttaatccttcgacacaactctgatttctaccaaatcaacgatttctctaacctaactaccgccgttaaactcaa |
102 |
Q |
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| T |
29442694 |
tcaatcgttccttaatccttcgacacaactttgatttctaccaaatcgaagatttctctaacctaaccaccggcgttaaactcaa |
29442778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 5e-39; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 5e-39
Query Start/End: Original strand, 11 - 156
Target Start/End: Complemental strand, 14551141 - 14550996
Alignment:
| Q |
11 |
aattccttcaatcgttccttaatccttcgacacaactctgatttctaccaaatcaacgatttctctaacctaactaccgccgttaaactcaatcctcctt |
110 |
Q |
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| T |
14551141 |
aattccctcaattgttccttaatccttcgacacaagtccaatctctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcctt |
14551042 |
T |
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| Q |
111 |
tcaaaagctccaacaacttcatctctctggtcggatcatgtaacgg |
156 |
Q |
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| T |
14551041 |
tcgaaggcttcaacaacttcatctctctgctcggttcatgtaacgg |
14550996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 8572829 - 8572882
Alignment:
| Q |
11 |
aattccttcaatcgttccttaatccttcgacacaactctgatttctaccaaatc |
64 |
Q |
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| T |
8572829 |
aattccctcaatcgttccttaatcattcgacgcaactacgatatctaccaaatc |
8572882 |
T |
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