View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4931_high_1 (Length: 453)
Name: NF4931_high_1
Description: NF4931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4931_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 15 - 437
Target Start/End: Original strand, 45068842 - 45069264
Alignment:
| Q |
15 |
actccacacgtaaaagtatgaagaatgaaaaatgggaattgattaaaaatgaataaaggattggatgattgattctgttcaatggttatcggttttgttt |
114 |
Q |
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| T |
45068842 |
actccacacgtaaaagtatgaagaatgaaaaatgggaattgattaaaaatgaataaaggagtggatgattgattctgttcaatggttatcggttttgttt |
45068941 |
T |
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| Q |
115 |
gtcttttagtttcaactagtataagacatggatattaaggttgctttatgacaagaagtagctgtcagtttatgatttccatgagattgttataacttta |
214 |
Q |
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| T |
45068942 |
gtcttttagtttcaactagtataagacatggatattaaggttgctttatgacaagaagtagctgtcagtttatgatttccatgagattgttataacttta |
45069041 |
T |
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| Q |
215 |
tttaaaggttaatgataaggtttggattgtttttctcgtggaataggatgaacaggatagaaaacagtaaaaaagattagtacatttttggttctttctg |
314 |
Q |
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| T |
45069042 |
tttaaaggttaatgataaggtttggattgtttttctcgtggaataggatgaacaggatagaaaacagtaaaaaagattagtacatttttggttctttctg |
45069141 |
T |
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| Q |
315 |
tgacatactcatgtgaacttgtttgagtgttactgttacttgtccacgctgctcatgcagatggttgagtatacaaaatattattaacgttttctttttt |
414 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45069142 |
tgacttactcatgtgaacttgtttgagtgttactattacttgtccacgctgctcatgcagatggttgagtatacaaaatattattaacgttttctttttt |
45069241 |
T |
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| Q |
415 |
aagaaataaatattatactattg |
437 |
Q |
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| T |
45069242 |
aagaaataaatattatactattg |
45069264 |
T |
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