View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4931_low_3 (Length: 269)

Name: NF4931_low_3
Description: NF4931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4931_low_3
NF4931_low_3
[»] chr7 (1 HSPs)
chr7 (32-191)||(47363495-47363658)
[»] chr1 (2 HSPs)
chr1 (79-156)||(34711561-34711638)
chr1 (1-70)||(4816742-4816811)
[»] chr3 (5 HSPs)
chr3 (77-261)||(33508409-33508590)
chr3 (148-185)||(1930009-1930046)
chr3 (119-191)||(8690337-8690409)
chr3 (119-191)||(9042206-9042278)
chr3 (1-70)||(25500985-25501054)
[»] chr6 (1 HSPs)
chr6 (148-185)||(1069058-1069095)
[»] chr5 (1 HSPs)
chr5 (1-70)||(43391063-43391132)
[»] chr2 (1 HSPs)
chr2 (148-185)||(29370290-29370327)


Alignment Details
Target: chr7 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 32 - 191
Target Start/End: Complemental strand, 47363658 - 47363495
Alignment:
Q  32 aattttgacactcttgctaggtta----tgggcgacacaatttctttataagtttggaaaatgacacaaaaatgatctacaacgagacataatattacca 127  Q
    ||||||||||||||||||||| ||    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  47363658 aattttgacactcttgctaggctagctatgggcgacacaatttctttataagtttgaaaaatgacacaaaaatgatctacaacgagacataatattatca 47363559  T
Q  128 aattccaactgattattgggcctatcaactatgctatcagccactagcttacaatctaactcaa 191  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||    
T  47363558 aattccaactgattattcggcctatcaactatgctatcagccactagcttagaatctagctcaa 47363495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 79 - 156
Target Start/End: Original strand, 34711561 - 34711638
Alignment:
Q  79 gtttggaaaatgacacaaaaatgatctacaacgagacataatattaccaaattccaactgattattgggcctatcaac 156  Q
    |||||||| ||||||||| | ||||||||| |||||||||||||||| ||||||| |||||||||||| |||||||||    
T  34711561 gtttggaacatgacacaatagtgatctacatcgagacataatattactaaattccgactgattattggacctatcaac 34711638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 4816811 - 4816742
Alignment:
Q  1 aatcaaatcaaagacttgatgatgagcatacaattttgacactcttgctaggttatgggcgacacaattt 70  Q
    |||||||||||||||||| ||| ||||||||||||||||| | ||||||| | ||||||||||| |||||    
T  4816811 aatcaaatcaaagacttggtgacgagcatacaattttgactcccttgctaagctatgggcgacataattt 4816742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 261
Target Start/End: Complemental strand, 33508590 - 33508409
Alignment:
Q  77 aagtttggaaaatgacacaaaaatgatctacaacgagacataatattaccaaattccaactgattattgggcctatcaactatgctatcagccactagct 176  Q
    |||||| ||||||||||||| | ||||||||| | | ||||||||||| ||||||   || ||||||||| |||||||| |||| || |  | |||| ||    
T  33508590 aagtttagaaaatgacacaatagtgatctacaccaa-acataatattatcaaattttgaccgattattggacctatcaaatatgatacccactactaact 33508492  T
Q  177 tacaatctaactcaatttagcaccttcgataatctcaattgatcaaaaccatgagatggcatcagacaaccccattgcctatgct 261  Q
    ||||||| | |||||||| ||||||| |||| |  ||||||||| || |||| ||||||| |||  ||| |||||||||||||||    
T  33508491 tacaatcaagctcaattt-gcacctttgatagttccaattgatc-aagccataagatggcgtcacgcaagcccattgcctatgct 33508409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 1930046 - 1930009
Alignment:
Q  148 cctatcaactatgctatcagccactagcttacaatcta 185  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  1930046 cctatcaactatgctatcaaccactagcttacaatcta 1930009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 191
Target Start/End: Complemental strand, 8690409 - 8690337
Alignment:
Q  119 atattaccaaattccaactgattattgggcctatcaactatgctatcagccactagcttacaatctaactcaa 191  Q
    ||||||||||| ||   |||| |||| | ||||||||||||||||||| | |||||||||||||||| |||||    
T  8690409 atattaccaaactcagcctgaatattagtcctatcaactatgctatcaactactagcttacaatctagctcaa 8690337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 191
Target Start/End: Complemental strand, 9042278 - 9042206
Alignment:
Q  119 atattaccaaattccaactgattattgggcctatcaactatgctatcagccactagcttacaatctaactcaa 191  Q
    ||||||||||| ||   |||| |||| | ||||||||||||||||||| | |||||||||||||||| |||||    
T  9042278 atattaccaaactcagcctgaatattagtcctatcaactatgctatcaactactagcttacaatctagctcaa 9042206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 25501054 - 25500985
Alignment:
Q  1 aatcaaatcaaagacttgatgatgagcatacaattttgacactcttgctaggttatgggcgacacaattt 70  Q
    |||||||| ||||||| | ||| ||||||||||||||||  | |||||||   |||||||||||||||||    
T  25501054 aatcaaatgaaagactcggtgacgagcatacaattttgatgcccttgctaaactatgggcgacacaattt 25500985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 1069058 - 1069095
Alignment:
Q  148 cctatcaactatgctatcagccactagcttacaatcta 185  Q
    ||||| ||||||||||||| ||||||||||||||||||    
T  1069058 cctatgaactatgctatcatccactagcttacaatcta 1069095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 43391063 - 43391132
Alignment:
Q  1 aatcaaatcaaagacttgatgatgagcatacaattttgacactcttgctaggttatgggcgacacaattt 70  Q
    |||||||||||| || ||||||  |||||||| ||||||||| |||||||   ||||||||||| |||||    
T  43391063 aatcaaatcaaaaacatgatgactagcatacagttttgacacccttgctaaagtatgggcgacataattt 43391132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 29370327 - 29370290
Alignment:
Q  148 cctatcaactatgctatcagccactagcttacaatcta 185  Q
    |||||||| |||||||||| ||||||||||||||||||    
T  29370327 cctatcaattatgctatcaaccactagcttacaatcta 29370290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University