View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4931_low_5 (Length: 222)
Name: NF4931_low_5
Description: NF4931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4931_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 6132669 - 6132456
Alignment:
| Q |
1 |
tgcgcaaaccatgcctggattacgccatctccagctttttggaagcaagatgactaatgatggtttgcttgctattcttgatggctgtcttcaccttgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6132669 |
tgcgcaaaccatgcctggattacgccatctccagctttttggaaacaagatgactaatgatggtttgcttgctattcttgatggctgtcttcaccttgaa |
6132570 |
T |
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| Q |
101 |
tctctcgacatacgccaatgtttcaacattaattttaatttggtagcaagtgtggggaagagatttatagaacaagtcaagtatttacggcttccatatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6132569 |
tctctcgacatacgccaatgtttcaacattaattttaatttggtagcaagtgtggggaagagatttatagaacaagtcaagtatttacggcttccatatg |
6132470 |
T |
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| Q |
201 |
atgccactgatgat |
214 |
Q |
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|||||||||||||| |
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| T |
6132469 |
atgccactgatgat |
6132456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 6043472 - 6043597
Alignment:
| Q |
1 |
tgcgcaaaccatgcctggattacgccatctccagctttttggaagcaagatgactaatgatggtttgcttgctattcttgatggctgtcttcaccttgaa |
100 |
Q |
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|||| ||||||||||||| |||||||||||||| |||||||||| |||||||| |||||||||||||| ||||||||||||||| |||| || ||||||| |
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| T |
6043472 |
tgcggaaaccatgcctgggttacgccatctccaactttttggaaacaagatgagtaatgatggtttgcgtgctattcttgatggttgtcctctccttgaa |
6043571 |
T |
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| Q |
101 |
tctctcgacatacgccaatgtttcaa |
126 |
Q |
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||||| |||||||| || |||||||| |
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| T |
6043572 |
tctcttgacatacgtcagtgtttcaa |
6043597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 10 - 213
Target Start/End: Original strand, 6053584 - 6053781
Alignment:
| Q |
10 |
catgcctggattacgccatctccagctttttggaagcaagatgactaatgatggtttgcttgctattcttgatggctgtcttcaccttgaatctctcgac |
109 |
Q |
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||||||||| || ||||||||||||||| | |||| | |||||||||||||||| ||| ||||| ||||||||||||||| ||||||||||||||| ||| |
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| T |
6053584 |
catgcctgggttgcgccatctccagcttatcggaaacgagatgactaatgatggcttggttgctcttcttgatggctgtcctcaccttgaatctcttgac |
6053683 |
T |
|
| Q |
110 |
atacgccaatgtttcaacattaattttaatttggtagcaagtgtggggaagagatttatagaacaagtcaagtatttacggcttccatatgatgccactg |
209 |
Q |
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||||| | |||||| ||| |||||||||||| || | |||||||| ||| || ||| || |||||||||| ||||||||| |||| ||||||| |
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| T |
6053684 |
atacgtcggtgtttc------aatgttaatttggtaggaactttggggaagcgatgtaaagagcagatcaagtattttcggcttccacatgacgccactg |
6053777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 6 - 126
Target Start/End: Original strand, 6046778 - 6046898
Alignment:
| Q |
6 |
aaaccatgcctggattacgccatctccagctttttggaagcaagatgactaatgatggtttgcttgctattcttgatggctgtcttcaccttgaatctct |
105 |
Q |
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||||||||||||| |||||||||||| |||| |||||| |||||||| ||| |||||||||| ||||||||||||||| |||| ||||||||||||||| |
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| T |
6046778 |
aaaccatgcctgggttacgccatctcatgcttgttggaaacaagatgagtaaggatggtttgcgtgctattcttgatggttgtcctcaccttgaatctct |
6046877 |
T |
|
| Q |
106 |
cgacatacgccaatgtttcaa |
126 |
Q |
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|||||||| || |||||||| |
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| T |
6046878 |
tgacatacgtcagtgtttcaa |
6046898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 6038070 - 6038123
Alignment:
| Q |
48 |
agatgactaatgatggtttgcttgctattcttgatggctgtcttcaccttgaat |
101 |
Q |
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|||| |||||| | |||||||| |||||||||||||| |||| ||||||||||| |
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| T |
6038070 |
agataactaataaaggtttgctggctattcttgatggttgtcctcaccttgaat |
6038123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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