View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4932-Insertion-1 (Length: 821)
Name: NF4932-Insertion-1
Description: NF4932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4932-Insertion-1 |
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Alignment Details
Target: chr5 (Bit Score: 702; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 702; E-Value: 0
Query Start/End: Original strand, 8 - 803
Target Start/End: Original strand, 35478244 - 35479032
Alignment:
| Q |
8 |
tgcttatttcaagaaccattttgttgactgaaaatacaatcaaagattaaaaaagtctttgaagacggtcgcgaaacagtattgatagtttccgttatcg |
107 |
Q |
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| T |
35478244 |
tgcttatttcaagaaccattttgttgactgaaaatacaatcaaagattaaaaaagtctttgaagacggtcgcgaaacagtattgatagtttccgttatcg |
35478343 |
T |
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| Q |
108 |
tgatttattcagaccgcgacaatagtaatccgcatgcatcattatgtaattgtgaattccttaatgcgaccgcactgttgtttaaaacattgtgatataa |
207 |
Q |
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| T |
35478344 |
tgattaattcagaccgcgacaatagtaatccacatgcatcattatgtaatcgtgaattccttaatgcgaccgcactgttgtttaaaacattgtgatataa |
35478443 |
T |
|
| Q |
208 |
tatcacttatataatcttggtgtaattaagaattgagaattgcattgtgtggtcaattatataataatcctaagttcctatactagggagtttgataaga |
307 |
Q |
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| T |
35478444 |
tatcacttatataatcttggtgtaattaagaattg-------cattgtgtggtcaattatataataatcctaagttcctatactagggagtttgataaga |
35478536 |
T |
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| Q |
308 |
gacttggtttgtgttttgttttggtaggaagagcatgaccaaatcagagcaaagaaaagttgccaagacgtaccattggagtggacagattacaagtcaa |
407 |
Q |
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| T |
35478537 |
gacttggtttgtgttttgttttggtaggaagagcatgaccaaatcagagcaaagaaaagttgccaagacgtaccattggagtggacagattacaagtcaa |
35478636 |
T |
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| Q |
408 |
tggtatttactcaatgtgtaagatcattaatattctgctgattcaaaacatcaaaagtaaaa-cccgtttcacatacnnnnnnngcacaacatattatct |
506 |
Q |
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| T |
35478637 |
tggcatttactcaatgtgtaagatcattaa-attctgctgattcaaaacatcaaaagaaaaaacccgtttcacatacaaaaaaagcacagcatattatct |
35478735 |
T |
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| Q |
507 |
tcttatattaataatcttgtccttgtttgttctatgtaggttgtgaatgagactttaaggatggcaaacataattggtgggatatttaggagagcaatga |
606 |
Q |
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| T |
35478736 |
tcttatattaataatcttgtccttgtttgttctatgtaggttgtgaatgagactttaaggatggcaaacataattggtgggatatttaggagagcaatga |
35478835 |
T |
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| Q |
607 |
cagacatcaatatcaaaggtatagtatgtattatcatgacaaaaacataatttaaaatcaaaacatttattttgaattttaatttttgacttgtaataca |
706 |
Q |
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| T |
35478836 |
cagacatcaatatcaaaggtatagtatacattatcatgacaaaaacataatttaaaatcaaaacatttattttgaattttaatttttgacttgtaataca |
35478935 |
T |
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| Q |
707 |
ggctacactattccaaaggggtggaaagtctttgcatcatttcgtgccgtacatctaaaccccgatcatttcaaagatgcgcgcaccttcaatccat |
803 |
Q |
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| T |
35478936 |
ggctacactattccaaaggggtggaaagtctttgcatcatttcgtgccgtacatctaaaccccgatcatttcaaagatgcgcgcaccttcaatccat |
35479032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 538 - 627
Target Start/End: Original strand, 31556956 - 31557045
Alignment:
| Q |
538 |
ctatgtaggttgtgaatgagactttaaggatggcaaacataattggtgggatatttaggagagcaatgacagacatcaatatcaaaggta |
627 |
Q |
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| T |
31556956 |
ctatgcaggttgtgaatgagaccttaagggttgcaaacataattggtgccatatttaggagaacaaccacagacatcgacataaaaggta |
31557045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 384 - 429
Target Start/End: Original strand, 31556845 - 31556890
Alignment:
| Q |
384 |
tggagtggacagattacaagtcaatggtatttactcaatgtgtaag |
429 |
Q |
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| T |
31556845 |
tggaatggacagattacaagtcaatgacatttactcaatgtgtaag |
31556890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 738 - 803
Target Start/End: Original strand, 31557178 - 31557243
Alignment:
| Q |
738 |
ttgcatcatttcgtgccgtacatctaaaccccgatcatttcaaagatgcgcgcaccttcaatccat |
803 |
Q |
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| T |
31557178 |
ttgcatcatttcgtgctgtgcatttgaatcctgaacatttcaaagatgctcgcaccttcaatccat |
31557243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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