View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4932-Insertion-10 (Length: 239)
Name: NF4932-Insertion-10
Description: NF4932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4932-Insertion-10 |
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| [»] chr6 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 8 - 239
Target Start/End: Original strand, 27075462 - 27075693
Alignment:
| Q |
8 |
cctacaaggttgccaaagacatttgggacaacatgaatgtcaagtacactgctgaggaggctaccaaacagaagttcgtggtcggaaactacctgcgatg |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27075462 |
cctacaaggttgccaaagacatttgggacaacatgaatgtcaagtacactgctgaggaggctaccaaacagaagttcgtggtcggaaactacctgtgatg |
27075561 |
T |
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| Q |
108 |
gcaaatgaaagaggacaaggaaataaaagtgcagatcaacgagtatcaccaactcattgaagaattgaaggcggagaacatcatacttccagatgtgttt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27075562 |
gcaaatgaaagaggacaaggaaataaaagtgcagatcaacgagtatcaccaactcattgaagaattgaaggcggagaacatcatacttccagatgtgttt |
27075661 |
T |
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| Q |
208 |
gtcgctgctgccctggttgaaaaattgcctag |
239 |
Q |
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| T |
27075662 |
gtcgctgctgccctggttgaaaagttgcctag |
27075693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 8 - 239
Target Start/End: Original strand, 26050495 - 26050721
Alignment:
| Q |
8 |
cctacaaggttgccaaagacatttgggacaacatgaatgtcaagtacactgctgaggaggctaccaaacagaagttcgtggtcggaaactacctgcgatg |
107 |
Q |
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| T |
26050495 |
cctacaaggttgccaaagacatttgggacaacatgaatgtcaagtacactgctgaggaggctaccaaacagaagttcgtggtcggaaactacctg----- |
26050589 |
T |
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| Q |
108 |
gcaaatgaaagaggacaaggaaataaaagtgcagatcaacgagtatcaccaactcattgaagaattgaaggcggagaacatcatacttccagatgtgttt |
207 |
Q |
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| T |
26050590 |
gcaaatgaaagaggacaaggaaataaaagtgcagatcaacgagtatcaccaactcattgaagaattgaaggcggagaacatcatacttccagatgtgttt |
26050689 |
T |
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| Q |
208 |
gtcgctgctgccctggttgaaaaattgcctag |
239 |
Q |
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| T |
26050690 |
gtcgctgctgccctggttgaaaagttgcctag |
26050721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 8 - 236
Target Start/End: Original strand, 36610477 - 36610705
Alignment:
| Q |
8 |
cctacaaggttgccaaagacatttgggacaacatgaatgtcaagtacactgctgaggaggctaccaaacagaagttcgtggtcggaaactacctgcgatg |
107 |
Q |
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| T |
36610477 |
cctacaaggttgccgaagaaatttgggacaacatgaatgtcaagtacactgttgaggatgctaccaagcagaagtttgttgttggtaactatctatgatg |
36610576 |
T |
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| Q |
108 |
gcaaatgaaagaggacaaggaaataaaagtgcagatcaacgagtatcaccaactcattgaagaattgaaggcggagaacatcatacttccagatgtgttt |
207 |
Q |
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| T |
36610577 |
gaaaatgaaagaggacaagaaaatcaaagtgcagatcaatgagtatcaccaactccttgcagaattgaaggccgagaacatcatacttccagacgtgttt |
36610676 |
T |
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| Q |
208 |
gtcgctgctgccctggttgaaaaattgcc |
236 |
Q |
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| T |
36610677 |
gtcgctgatgccttggttgaaaagttgcc |
36610705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 36611552 - 36611331
Alignment:
| Q |
8 |
cctacaaggttgccaaagacatttgggacaacatgaatgtcaagtacactgctgaggaggctaccaaacagaa-----gttcgtggtcggaaactacctg |
102 |
Q |
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||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||| | |||||||||||| ||| || || |||||||| |
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| T |
36611552 |
cctacaaggttgccaaacaaatttgggacaacatgaatgtcaagtgcactgctgaggatgttaccaaacagaagttatgtttgttgttggaaacta---- |
36611457 |
T |
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| Q |
103 |
cgatggcaaatgaaagaggacaaggaaataaaagtgcagatcaacgagtatcaccaactcattgaagaattgaaggcggagaac-----atcatacttcc |
197 |
Q |
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|||| ||||||||||||||||| ||||| |||||||| || |||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
36611456 |
tgatgacaaatgaaagaggacaatgaaatcaaagtgcaaat-------tatcaccaactccttgaagaattgaaggcggagaacatcatatcatacttcc |
36611364 |
T |
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| Q |
198 |
agatgtgtttgtcgctgctgccctggttgaaaa |
230 |
Q |
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||| |||||||||||| |||| |||||||||| |
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| T |
36611363 |
agacgtgtttgtcgctagtgccttggttgaaaa |
36611331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 14 - 230
Target Start/End: Complemental strand, 14636068 - 14635853
Alignment:
| Q |
14 |
aggttgccaaagacatttgggacaacatgaatgtcaagtacactgctgaggaggctaccaaacagaagttcgtggtcggaaactacctgcgatggcaaat |
113 |
Q |
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||||||||||||| |||||||||||||||||||||||||||| || |||||| ||||||||||| || || | || |||||||| | || |||||||| |
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| T |
14636068 |
aggttgccaaagaaatttgggacaacatgaatgtcaagtacattgatgaggatgctaccaaacataaatttattgttggaaactatttacggtggcaaat |
14635969 |
T |
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| Q |
114 |
gaaagaggacaaggaaataaaagtgcagatcaacgagtatcaccaactcattgaagaattgaaggcggagaacatcatacttccagatgtgtttgtcgct |
213 |
Q |
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| T |
14635968 |
gaaagaggacaatgaaatcaaagtgcagatcaatgagtatcaccaaatta-tgaagagttgaaggtggagaacatcaaacttctagatgtgtttgtcgtt |
14635870 |
T |
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| Q |
214 |
gctgccctggttgaaaa |
230 |
Q |
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| T |
14635869 |
ggtgcattggttgaaaa |
14635853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 235
Target Start/End: Complemental strand, 2929906 - 2929679
Alignment:
| Q |
8 |
cctacaaggttgccaaagacatttgggacaacatgaatgtcaagtacactgctgaggaggctaccaaacagaagttcgtggtcggaaactacctgcgatg |
107 |
Q |
| |
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|||||||||| |||||||| |||||||||||||||||||||| |||||||| |||| | |||| || | ||||| || || ||||||| || |||| |
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| T |
2929906 |
cctacaaggtggccaaagaaatttgggacaacatgaatgtcatgtacactggtgagaacgctattaaggataagttagttgtttgaaactatctccgata |
2929807 |
T |
|
| Q |
108 |
gcaaatgaaagaggacaaggaaataaaagtgcagatcaacgagtatcaccaactcattgaagaattgaaggcggagaacatcatacttccagatgtgttt |
207 |
Q |
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||||||||| ||||||||||||| |||| | ||||||| || || ||||| ||| ||||||||||||| |||| |||||| | | ||||||| |||| |
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| T |
2929806 |
acaaatgaaataggacaaggaaatcaaagcgtagatcaatgaataccaccacctccttgaagaattgaaaagggaggacatcaaaatcccagatgcgttt |
2929707 |
T |
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| Q |
208 |
gtcgctgctgccctggttgaaaaattgc |
235 |
Q |
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|| || |||| |||||||| |||||| |
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| T |
2929706 |
gtttatggtgccttggttgaacaattgc |
2929679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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