View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4932-Insertion-5 (Length: 489)
Name: NF4932-Insertion-5
Description: NF4932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4932-Insertion-5 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 8 - 489
Target Start/End: Original strand, 24906483 - 24906956
Alignment:
| Q |
8 |
attccaacaccaaa-cctccaacaacaaaaacccttgtagaaaaactcctcaaagaagcttctgattcttcagattcacctcatttgcttattcaaaccc |
106 |
Q |
| |
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|||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
24906483 |
attccaacaccaaaacctccaacaacaaaaatccttatagaaaaactcctcaaagaagcttctgatt---------cacctcatttgcttattcaaaccc |
24906573 |
T |
|
| Q |
107 |
taaaaaagctcaaaacaatagcatccgagagcgaaacaaatagacggtgtatcgaatcggccggcgctgttgagttcttagcatcaatagtaacaaaaaa |
206 |
Q |
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||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||| |||| |
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| T |
24906574 |
taaaaaagctcaaaacaattgcctctgagagcgaaacaaatagacggtgtatcgaatcggctggcgctgtcgagtttttagcatcaatagtaacacaaaa |
24906673 |
T |
|
| Q |
207 |
caacactggttgttcatcttcatgttcaacaacggaattaattgaagctagctttgatgatgatgatgttgaaggttttgcttttgacttcaaaataggt |
306 |
Q |
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|||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24906674 |
caacacaagttgttcatcttcatgttcagcaacagaattaattgaagctagctttgatgatgatgatgttgaaggttttgcttttgacttcaaaataggt |
24906773 |
T |
|
| Q |
307 |
gcagaagatgaagctatcaacatcctttacaatcttcaattatcagaacaaggtttgaaaactctcttaaacttcaaaaatggagaatttttagactctc |
406 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24906774 |
gcagaagatgaagctataaacatcctttacaatcttcaattatcagaacaaggtttgaaaactctcttaaacttcaaaaatggagaatttttagactctt |
24906873 |
T |
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| Q |
407 |
taatgagattattacaaaaaggtaactacgattcaagaacatacgcagtttttctgttgaaatctatgtcaaaagtagctgat |
489 |
Q |
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| T |
24906874 |
taatgagattattacaaaagggtaactacgattcaagaacatacgcagtttgtttgctgaaatctatatcaaaagttgctgat |
24906956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 8 - 489
Target Start/End: Complemental strand, 24890943 - 24890470
Alignment:
| Q |
8 |
attccaacaccaaa-cctccaacaacaaaaacccttgtagaaaaactcctcaaagaagcttctgattcttcagattcacctcatttgcttattcaaaccc |
106 |
Q |
| |
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|||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
24890943 |
attccaacaccaaaacctccaacaacaaaaaaccttatagaaaaactcctcaaagaagcttctgattc---------acctcatttgcttattcaaaccc |
24890853 |
T |
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| Q |
107 |
taaaaaagctcaaaacaatagcatccgagagcgaaacaaatagacggtgtatcgaatcggccggcgctgttgagttcttagcatcaatagtaacaaaaaa |
206 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||| |||| |
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| T |
24890852 |
taaaaaagctcaaaacaattgcatccgagagcgaaacaaatagacggtgtatcgaatcggcaggcgctgtcgagtttttagcatcaatagtaacacaaaa |
24890753 |
T |
|
| Q |
207 |
caacactggttgttcatcttcatgttcaacaacggaattaattgaagctagctttgatgatgatgatgttgaaggttttgcttttgacttcaaaataggt |
306 |
Q |
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|||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24890752 |
caacacaagttgttcatcttcatgttcagcaacagaattaattgaagctagctttgatgatgatgatgttgaaggttttgcttttgacttcaaaataggt |
24890653 |
T |
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| Q |
307 |
gcagaagatgaagctatcaacatcctttacaatcttcaattatcagaacaaggtttgaaaactctcttaaacttcaaaaatggagaatttttagactctc |
406 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
24890652 |
gcagaagatgaagctataaacatcctttacaatcttcaattatcagaacaaggtttgaaaactctcttaaacttcaaaaatggagaatttatagactctt |
24890553 |
T |
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| Q |
407 |
taatgagattattacaaaaaggtaactacgattcaagaacatacgcagtttttctgttgaaatctatgtcaaaagtagctgat |
489 |
Q |
| |
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|||| | |||||||||||| ||||||||||| ||||||||||||||||||| | || |||||||||| ||||||||||||||| |
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| T |
24890552 |
taataaaattattacaaaagggtaactacgaatcaagaacatacgcagtttatatgatgaaatctatatcaaaagtagctgat |
24890470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 19 - 489
Target Start/End: Original strand, 24899036 - 24899497
Alignment:
| Q |
19 |
aaacctccaacaacaaaaacccttgtagaaaaactcctcaaagaagcttctgattcttcagattcacctcatttgcttattcaaaccctaaaaaagctca |
118 |
Q |
| |
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||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
24899036 |
aaacctccaacaacaaaaatccttatagaaaaactcctcaaagaagcttctgatt---------cacctcatttgcttattcaaaccctaaaaaagctca |
24899126 |
T |
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| Q |
119 |
aaacaatagcatccgagagcgaaacaaatagacggtgtatcgaatcggccggcgctgttgagttcttagcatcaatagtaacaaaaaacaacactggttg |
218 |
Q |
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||||||| || || ||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||| |||||||||| |||| |
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| T |
24899127 |
aaacaattgcttctgagagcgaaacaaatagacggtgtatcgaatcggctggcgctgtcgagtttttagcatcaatagtaacacaaaacaacacaagttg |
24899226 |
T |
|
| Q |
219 |
ttcatcttcatgttcaacaacggaattaattgaagctagctttgatgatgatgatgttgaaggttttgcttttgacttcaaaataggtgcagaagatgaa |
318 |
Q |
| |
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|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24899227 |
ttcatcttcatgttcagcaacagaattaattgaagctagctttgatgatgatgatgttgaaggttttgcttttgacttcaaaataggtgcagaagatgaa |
24899326 |
T |
|
| Q |
319 |
gctatcaacatcctttacaatcttcaattatcagaacaaggtttgaaaactctcttaaacttcaaaaatggagaatttttagactctctaatgagattat |
418 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| | |
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| T |
24899327 |
gctataaacatcctttacaatcttcaattatcagaacaaggtttgaaaactctcttaaacttcaaaaatggagaatttttagactctttaattttatttt |
24899426 |
T |
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| Q |
419 |
tacaaaaaggtaactacgattcaagaacatacgcagtttttctgttgaaatctatgtcaaaagtagctgat |
489 |
Q |
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| || || ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||| |
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| T |
24899427 |
ttcataagggtaactacgattcaagaacatacgcagtttttttgttgaaatctatttcaaaagttgctgat |
24899497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 265 - 482
Target Start/End: Original strand, 5284950 - 5285163
Alignment:
| Q |
265 |
gatgatgatgttgaaggttttgcttttgacttcaaaataggtgcagaagatgaagctatcaacatcctttacaatcttcaattatcagaacaaggtttga |
364 |
Q |
| |
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|||||||| ||||||| |||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| || |||| |
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| T |
5284950 |
gatgatgacgttgaag-ttttgcttttgagttcaaaataggtgcagaggatgaagctatagacatcctttacaatcttcaattatcagaaaaatgttt-- |
5285046 |
T |
|
| Q |
365 |
aaactctcttaaacttcaaaaatggagaatttttagactctctaatgagattattacaaaaaggtaactacgattcaagaacatacgcagtttttctgtt |
464 |
Q |
| |
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||| ||||| ||||| |||||| ||||||||||||||||| ||||||||| || || ||||||||| |||||||||||| | ||| |||| |||| |
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| T |
5285047 |
taacactctttaacttaaaaaatagagaatttttagactcttcaatgagatttttctaagcgggtaactacaattcaagaacatgcacag-ttttatgtt |
5285145 |
T |
|
| Q |
465 |
gaaatctatgtcaaaagt |
482 |
Q |
| |
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||||||||| |||||||| |
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| T |
5285146 |
gaaatctatatcaaaagt |
5285163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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