View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4932-Insertion-9 (Length: 269)
Name: NF4932-Insertion-9
Description: NF4932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4932-Insertion-9 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 7 - 269
Target Start/End: Complemental strand, 46264221 - 46263959
Alignment:
| Q |
7 |
acctttcactttcattacttcttgtaacttgtgttgtttaaattttgtagtgttattgttaaagcagataagaaacttttgactgtacagtttcccgatg |
106 |
Q |
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| T |
46264221 |
acctttcactttcattacttcttgtaacttgtgttgtttaaattttgtagtgttattgttaaagcagataagaaacttttgactgtacagtttcccgatg |
46264122 |
T |
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| Q |
107 |
gtcatgagggacgggctttcacacttaaggtacttaaatcttcttttacatatcctatatttcaagagatgcctttctcataaagatgttagaattggta |
206 |
Q |
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| T |
46264121 |
gtcatgagggacgggctttcacacttaaggtacttaaatcttcttttacatatcctatatttcaagagatgcctttctcataaagatgttagaattggta |
46264022 |
T |
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| Q |
207 |
ttatgtaaaattgtatttcagcccatattgtttattcaatcctctaactctagtttctttatc |
269 |
Q |
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| T |
46264021 |
ttatgtaaaattgtatttcagcccatattgtttattcaatcctctaactctagtttctttatc |
46263959 |
T |
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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 46 - 137
Target Start/End: Original strand, 27774836 - 27774927
Alignment:
| Q |
46 |
aaattttgtagtgttattgttaaagcagataagaaacttttgactgtacagtttcccgatggtcatgagggacgggctttcacacttaaggt |
137 |
Q |
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| T |
27774836 |
aaattttgtagtgtttctatcaaagcagataagaaacttttgactgtacaatttcccaatgttcatgatggacgagtattaacacttaaggt |
27774927 |
T |
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