View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4932_high_1 (Length: 392)
Name: NF4932_high_1
Description: NF4932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4932_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 13 - 270
Target Start/End: Original strand, 4762524 - 4762781
Alignment:
| Q |
13 |
attctcaacgtggatgttaattaagagtatcacaagtattttttagaggatataatctcaaagttttcttttactaaagttcgatcaaacatatattata |
112 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4762524 |
attctcaacgtggatgttaattaagagtctcacaagtattttttagaggatataatctcaaagttttcttttactaaagttcgatcaaacatatattata |
4762623 |
T |
|
| Q |
113 |
gacttatttacggtctgaaatggctaagtataaatcaatcaaaccaatcaatctcacacaatcataaaatttatttattataatctagtgtcacaaataa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4762624 |
gacttatttacggtctgaaatggctaagtataaatcaatcaaaccaatcaatctcacacaatcataaaatttatttattataatctagtgtcacaaataa |
4762723 |
T |
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| Q |
213 |
aaatatttaaaatctgcagtacatagcattctttcttgtcaagtaatttttattcatg |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4762724 |
aaatatttaaaatctgcagtacatagcattctttcttgtcaagtaatttttattcatg |
4762781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 73 - 270
Target Start/End: Complemental strand, 4181309 - 4181104
Alignment:
| Q |
73 |
aagttttcttttactaaagttcgatcaaacatatattatagacttatttacggtctgaaatggct----aagtataaatcaatcaaaccaatcaatctca |
168 |
Q |
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|||||||||||| ||||| ||||| ||||| |||||||||||||||||||||||||||||| ||| | ||||||||||||||||| |||||||||| |
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| T |
4181309 |
aagttttcttttcctaaaattcgaccaaacttatattatagacttatttacggtctgaaattgctcgatatatataaatcaatcaaacctatcaatctca |
4181210 |
T |
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| Q |
169 |
cacaatcataaaatttatttattataatctagtgtcacaaataaaaatatttaaaatctgca----gtacatagcattctttcttgtcaagtaattttta |
264 |
Q |
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| T |
4181209 |
cacaatcataatatttatttattataatctagtgtcacaaataaaaatatttaaaatctgcagtacgtacatagcattctttcttgtcaagtaattttta |
4181110 |
T |
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| Q |
265 |
ttcatg |
270 |
Q |
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|||||| |
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| T |
4181109 |
ttcatg |
4181104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 104 - 270
Target Start/End: Complemental strand, 4177454 - 4177284
Alignment:
| Q |
104 |
tatattatagacttatttacggtctgaaatggct----aagtataaatcaatcaaaccaatcaatctcacacaatcataaaatttatttattataatcta |
199 |
Q |
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|||||||||||||||||||||||||||||| ||| | ||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
4177454 |
tatattatagacttatttacggtctgaaattgctcgatatatataaatcaattaaacctatcaatctcacacaatcataatatttatttattataatctg |
4177355 |
T |
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| Q |
200 |
gtgtcacaaataaaaatatttaaaatctgcagtacatagcattctttcttgtcaagtaatttttattcatg |
270 |
Q |
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| T |
4177354 |
gtgtcacaaataaaaatatttataatctgcagtacatagcactctttcttgtcaagtaatttttattcatg |
4177284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 95 - 209
Target Start/End: Original strand, 4638281 - 4638401
Alignment:
| Q |
95 |
gatcaaacatatattatagacttatttacggtctgaaatggctaagtata------aatcaatcaaaccaatcaatctcacacaatcataaaatttattt |
188 |
Q |
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|||||||||||||||||||||||||||||| ||| ||||||||| ||||| |||||||| |||||||||| |||||||||||||| |||||||| |
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| T |
4638281 |
gatcaaacatatattatagacttatttacgctctaaaatggctaggtatatatataaatcaatcgcaccaatcaatatcacacaatcataatatttattt |
4638380 |
T |
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| Q |
189 |
attataatctagtgtcacaaa |
209 |
Q |
| |
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|||||||||| |||||||||| |
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| T |
4638381 |
attataatctggtgtcacaaa |
4638401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 300 - 371
Target Start/End: Original strand, 4638421 - 4638492
Alignment:
| Q |
300 |
gttgccaactaggagagcacatattactatagaaaacaaacagcttggtaactaggaccacttattcagtac |
371 |
Q |
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|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4638421 |
gttgccaagtaggagagtacatattactatagaaaacaaacagcttggtaactaggaccacttattcagtac |
4638492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 300 - 371
Target Start/End: Original strand, 4762824 - 4762895
Alignment:
| Q |
300 |
gttgccaactaggagagcacatattactatagaaaacaaacagcttggtaactaggaccacttattcagtac |
371 |
Q |
| |
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|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4762824 |
gttgccaagtaggagagtacatattactatagaaaacaaacagcttggtaactaggaccacttattcagtac |
4762895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 301 - 371
Target Start/End: Complemental strand, 4181069 - 4180999
Alignment:
| Q |
301 |
ttgccaactaggagagcacatattactatagaaaacaaacagcttggtaactaggaccacttattcagtac |
371 |
Q |
| |
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||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4181069 |
ttgccaagtaggagagtacatattactatagaaaacaaacagcttggtaactaggaccacctattcagtac |
4180999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 300 - 371
Target Start/End: Complemental strand, 4177244 - 4177171
Alignment:
| Q |
300 |
gttgccaactaggagagcacatattactata--gaaaacaaacagcttggtaactaggaccacttattcagtac |
371 |
Q |
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|||||||| |||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
4177244 |
gttgccaagtaggagagtacatattactatatagaaaacaaacagcttggtaactagaaccacttattcagtac |
4177171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 4638032 - 4638097
Alignment:
| Q |
41 |
atcacaagtattttt--tagaggatataatctcaaagttttcttttactaaagttcgatcaaacata |
105 |
Q |
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||||||||||||||| |||| ||||||||||| | |||||||||||||||| |||||||||||||| |
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| T |
4638032 |
atcacaagtatttttgttagatgatataatctcga-gttttcttttactaaaattcgatcaaacata |
4638097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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