View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4932_low_2 (Length: 347)

Name: NF4932_low_2
Description: NF4932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4932_low_2
NF4932_low_2
[»] chr1 (2 HSPs)
chr1 (13-339)||(8141810-8142129)
chr1 (267-339)||(18375038-18375111)
[»] chr5 (2 HSPs)
chr5 (33-199)||(22210106-22210273)
chr5 (62-166)||(5351790-5351895)
[»] chr2 (3 HSPs)
chr2 (33-168)||(9130594-9130730)
chr2 (217-336)||(9130812-9130936)
chr2 (83-166)||(31037298-31037381)
[»] chr4 (3 HSPs)
chr4 (77-166)||(34730207-34730297)
chr4 (274-337)||(1492102-1492166)
chr4 (274-347)||(1514798-1514872)
[»] chr7 (1 HSPs)
chr7 (81-166)||(17907155-17907241)
[»] chr3 (4 HSPs)
chr3 (89-166)||(34786053-34786131)
chr3 (62-166)||(20166768-20166873)
chr3 (62-166)||(47652330-47652434)
chr3 (206-252)||(47953982-47954028)
[»] chr6 (1 HSPs)
chr6 (33-171)||(490848-490991)


Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 13 - 339
Target Start/End: Original strand, 8141810 - 8142129
Alignment:
Q  13 aatatagtacctaaaacctatcttggtagaatcagaagcagagtttgaggacattgattccgatgattcaattgaagaagttgaaggatatgcctcacta 112  Q
    ||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  8141810 aatatagtaccaaaaatctatcttggtggaatcagaagcagagtttgaggacattgattccgatgattcaattgaagaagttgaaggatatgcctcatta 8141909  T
Q  113 tctgaaaatgaggataatattatgttggagaagaggagaataattagatcttttatcaccgattagaacttaaaactaccaattatttagattttttgag 212  Q
    ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  8141910 tctgaaaatgaggataatattatgttggagaa---gagaataattagatcttttatcaccgattaaaacttaaaactaccaattatttagattttttgag 8142006  T
Q  213 ttttaagtcacttttaatttctgttaatggctttctgcaataatttatgcatatatcatgctttactagttgtttaactattgagattttttgttttata 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  8142007 ttttaagtcacttttaatttctgttaatggctttctgcaataatttatgc----atcatgctttactagttgtttaactatggagattttttgttttata 8142102  T
Q  313 tgaagtcattttaaatttctgtttatg 339  Q
    |||||||||||||||||||||||||||    
T  8142103 tgaagtcattttaaatttctgtttatg 8142129  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 339
Target Start/End: Original strand, 18375038 - 18375111
Alignment:
Q  267 atcatgctttactagttgttt-aactattgagattttttgttttatatgaagtcattttaaatttctgtttatg 339  Q
    |||||||||||  | |||||| |||||||||||||||  ||||||| | |||||||||| ||||||||||||||    
T  18375038 atcatgctttatcatttgtttgaactattgagattttgagttttatgtcaagtcatttttaatttctgtttatg 18375111  T

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Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 33 - 199
Target Start/End: Complemental strand, 22210273 - 22210106
Alignment:
Q  33 tcttggtagaatcagaagcagagtttgaggacattgattccgatgattcaattgaagaagttgaaggatatgcctcactatctgaaaatgaggataat-a 131  Q
    |||| |||||||| |||| |||||||||||| |||||||  ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |    
T  22210273 tcttagtagaatcggaagtagagtttgaggatattgatttagatgattcaatagaagaagttgaaggatgtgcctcactatctgaaaatgaggataatga 22210174  T
Q  132 ttatgttggagaagaggagaataattagatcttttatcaccgattagaacttaaaactaccaattatt 199  Q
    ||||||||| |||||||||||||| || ||||||||||||   |||||||||| ||||||||||||||    
T  22210173 ttatgttggggaagaggagaataactatatcttttatcactagttagaacttagaactaccaattatt 22210106  T

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Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 62 - 166
Target Start/End: Original strand, 5351790 - 5351895
Alignment:
Q  62 gacattgattccgatgattcaattgaagaagttgaaggatatgcctcactatctgaaaatgaggataat-attatgttggagaagaggagaataattaga 160  Q
    ||||||||||| || |||||| |||||||||||||||||||||||||||||| || ||||| ||||||| |||||||||| |||||||||||||||| ||    
T  5351790 gacattgattctgaggattcagttgaagaagttgaaggatatgcctcactatgtggaaatggggataatgattatgttggggaagaggagaataattgga 5351889  T
Q  161 tctttt 166  Q
    ||||||    
T  5351890 tctttt 5351895  T

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Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 33 - 168
Target Start/End: Original strand, 9130594 - 9130730
Alignment:
Q  33 tcttggtagaatcagaagcagagtttgaggacattgattccgatgattcaattgaagaagttgaaggatatgcctcactatctgaaaatgaggataa-ta 131  Q
    |||||||||||||||||||||||||| |||| |||||||| ||  ||||||||||||||||||| ||| ||||||||||||||||||||||||| || ||    
T  9130594 tcttggtagaatcagaagcagagtttaaggaaattgattcagacaattcaattgaagaagttgacggaaatgcctcactatctgaaaatgaggacaatta 9130693  T
Q  132 ttatgttggagaagaggagaataattagatcttttat 168  Q
    ||||||||| |||||||||||||||||||||||||||    
T  9130694 ttatgttggggaagaggagaataattagatcttttat 9130730  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 336
Target Start/End: Original strand, 9130812 - 9130936
Alignment:
Q  217 aagtcacttttaatttctgttaatggctttctgcaataatttatgcatatat----catgctttactagttgttt-aactattgagattttttgttttat 311  Q
    ||||||||||||||||||| | |||||||||||||||||| | ||||  |||    || | | |||||||||||| |||||||||||||||  ||| |||    
T  9130812 aagtcacttttaatttctgcttatggctttctgcaataatgtgtgcaactatgcaccaggttctactagttgtttgaactattgagattttaagttgtat 9130911  T
Q  312 atgaagtcattttaaatttctgttt 336  Q
    || || ||||||| |||||||||||    
T  9130912 atcaattcatttttaatttctgttt 9130936  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 166
Target Start/End: Complemental strand, 31037381 - 31037298
Alignment:
Q  83 attgaagaagttgaaggatatgcctcactatctgaaaatgaggataat-attatgttggagaagaggagaataattagatctttt 166  Q
    |||||| ||||||||||||||||||||| |||| |  ||| ||||||| |||||| ||| ||||| |||||||| ||||||||||    
T  31037381 attgaaaaagttgaaggatatgcctcacgatct-agtatgtggataatgattatgctggggaagaagagaataaatagatctttt 31037298  T

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Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 77 - 166
Target Start/End: Complemental strand, 34730297 - 34730207
Alignment:
Q  77 gattcaattgaagaagttgaaggatatgcctcactatctgaaaatgaggataat-attatgttggagaagaggagaataattagatctttt 166  Q
    ||||| ||| || ||||||||||||||||||||||||||||||||||||||||| || ||||| | |||||||||||||||||||||||||    
T  34730297 gattccatttaaaaagttgaaggatatgcctcactatctgaaaatgaggataatgatgatgttagggaagaggagaataattagatctttt 34730207  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 274 - 337
Target Start/End: Original strand, 1492102 - 1492166
Alignment:
Q  274 tttactagttgttt-aactattgagattttttgttttatatgaagtcattttaaatttctgttta 337  Q
    |||||||||||||| ||||||||| |||||  ||||||||| |||||||||| ||||||||||||    
T  1492102 tttactagttgtttgaactattgaaattttgagttttatatcaagtcatttttaatttctgttta 1492166  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 347
Target Start/End: Original strand, 1514798 - 1514872
Alignment:
Q  274 tttactagttgttt-aactattgagattttttgttttatatgaagtcattttaaatttctgtttatgcaggtttt 347  Q
    |||||||||||||| ||||||||| |||||  |||| |  | ||||||||||||||||||||||| | |||||||    
T  1514798 tttactagttgtttgaactattgaaattttgagtttaacgtcaagtcattttaaatttctgtttaggtaggtttt 1514872  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 81 - 166
Target Start/End: Complemental strand, 17907241 - 17907155
Alignment:
Q  81 caattgaagaagttgaaggatatgcctcactatctgaaaatgaggataa-tattatgttggagaagaggagaataattagatctttt 166  Q
    ||||| ||||||||||| ||||||||||||||||||||||||| ||||| ||||||||| | |||||||||| ||||||||||||||    
T  17907241 caatttaagaagttgaacgatatgcctcactatctgaaaatgaagataattattatgtttgggaagaggagagtaattagatctttt 17907155  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 89 - 166
Target Start/End: Complemental strand, 34786131 - 34786053
Alignment:
Q  89 gaagttgaaggatatgcctcactatctgaaaatgaggataat-attatgttggagaagaggagaataattagatctttt 166  Q
    |||||||||||| |||||| |||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  34786131 gaagttgaaggagatgcctaactaactgaaaatgaggataatgattatgttggggaagaggagaataattagatctttt 34786053  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 62 - 166
Target Start/End: Original strand, 20166768 - 20166873
Alignment:
Q  62 gacattgattccgatgattcaattgaagaagttgaaggatatgcctcactatctgaaaatgaggataat-attatgttggagaagaggagaataattaga 160  Q
    ||||||||||| || ||||| ||| ||||||||||||||||||||||||||||  |||||||||||||| |||||||| |  || |||| ||||||||||    
T  20166768 gacattgattctgaggattctatttaagaagttgaaggatatgcctcactatcgcaaaatgaggataatgattatgttaggaaataggaaaataattaga 20166867  T
Q  161 tctttt 166  Q
    ||||||    
T  20166868 tctttt 20166873  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 166
Target Start/End: Complemental strand, 47652434 - 47652330
Alignment:
Q  62 gacattgattccgatgattcaattgaagaagttgaaggatatgcctcactatctgaaaatgaggataa-tattatgttggagaagaggagaataattaga 160  Q
    |||||||||| | | |||||| || ||||||||||||||||||||||||||||| ||||||| |||||  |||||||||  ||||||||||||| |||||    
T  47652434 gacattgattacaaggattcattt-aagaagttgaaggatatgcctcactatctaaaaatgaagataacgattatgttgtggaagaggagaatagttaga 47652336  T
Q  161 tctttt 166  Q
    ||||||    
T  47652335 tctttt 47652330  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 47954028 - 47953982
Alignment:
Q  206 ttttgagttttaagtcacttttaatttctgttaatggctttctgcaa 252  Q
    ||||||||||||||||| ||||||||| ||||  |||||||||||||    
T  47954028 ttttgagttttaagtcatttttaatttatgtttctggctttctgcaa 47953982  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 33 - 171
Target Start/End: Complemental strand, 490991 - 490848
Alignment:
Q  33 tcttggtagaatcagaagcagagtttgaggacattgattccgatgattcaattgaagaagttgaaggatatgcctcactatctgaa---aatgaggataa 129  Q
    |||||||| ||||| |||||||||| ||||| |||||||| | ||||||||||||| |||||||  ||||||| |||  | |||||   || ||||||||    
T  490991 tcttggtataatcaaaagcagagttagaggatattgattcaggtgattcaattgaaaaagttgacagatatgcttcaaaacctgaaaacaacgaggataa 490892  T
Q  130 t-attatgtt-ggagaagaggagaataattagatcttttatcac 171  Q
    | |||||||| || ||||||||| ||||||||||||||||||||    
T  490891 tgattatgttgggggaagaggagcataattagatcttttatcac 490848  T

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