View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4932_low_7 (Length: 233)

Name: NF4932_low_7
Description: NF4932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4932_low_7
NF4932_low_7
[»] chr1 (3 HSPs)
chr1 (77-136)||(12228314-12228373)
chr1 (77-136)||(35167510-35167569)
chr1 (13-56)||(12228393-12228436)
[»] chr4 (1 HSPs)
chr4 (13-136)||(45099932-45100055)


Alignment Details
Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 77 - 136
Target Start/End: Complemental strand, 12228373 - 12228314
Alignment:
Q  77 ttaacacataatttcatctatgaattatctacataaaatttgaacaaaaacattgaaaac 136  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12228373 ttaacacgtaatttcatctatgaattatctacataaaatttgaacaaaaacattgaaaac 12228314  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 77 - 136
Target Start/End: Original strand, 35167510 - 35167569
Alignment:
Q  77 ttaacacataatttcatctatgaattatctacataaaatttgaacaaaaacattgaaaac 136  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  35167510 ttaacacataatttcatctatgaattatctacacaaaatttgaacgaaaacattgaaaac 35167569  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 12228436 - 12228393
Alignment:
Q  13 aatatcaccgttataagctccaatttaccataaacagagccact 56  Q
    ||||||||||||||| |||||||||||| |||||||||||||||    
T  12228436 aatatcaccgttataggctccaatttacaataaacagagccact 12228393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 45100055 - 45099932
Alignment:
Q  13 aatatcaccgttataagctccaatttaccataaacagagccactnnnnnnnnnnnnnnnnnnnnttaacacataatttcatctatgaattatctacataa 112  Q
    ||||||||||||||| ||||||||||||||||||||||||||||                    |||||||  |||||||||||||||||||||||||||    
T  45100055 aatatcaccgttataggctccaatttaccataaacagagccactaaaaaaggaaaaaagaaaaattaacacgcaatttcatctatgaattatctacataa 45099956  T
Q  113 aatttgaacaaaaacattgaaaac 136  Q
    ||||||||||||||||||||||||    
T  45099955 aatttgaacaaaaacattgaaaac 45099932  T

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