View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4933-Insertion-1 (Length: 545)

Name: NF4933-Insertion-1
Description: NF4933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4933-Insertion-1
NF4933-Insertion-1
[»] chr6 (7 HSPs)
chr6 (205-545)||(12339187-12339533)
chr6 (8-157)||(12338628-12338777)
chr6 (291-486)||(35186058-35186252)
chr6 (50-149)||(35185730-35185829)
chr6 (40-148)||(12306685-12306793)
chr6 (364-461)||(12308159-12308256)
chr6 (160-188)||(12339142-12339170)


Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 205 - 545
Target Start/End: Original strand, 12339187 - 12339533
Alignment:
Q  205 atgttatattggataactttaaactcaaaaaacaatatgataagctaaaattagttcttacaaatggttgaatcgaaagcaatgaaccagcacattccgc 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12339187 atgttatattggataactttaaactcaaaaaacaatatgataagctaaaattagttcttacaaatggttgaatcgaaagcaatgaaccagcacattccgc 12339286  T
Q  305 aggccagtgcccatcatgagcttgaattgaggaagagaaactaattgctctttcttattgtagtaatcaatgcctcctctgttatgttatctacgtctct 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12339287 aggccagtgcccatcatgagcttgaattgaggaagagaaactaattgctc-ttcttattgtagtaatcaatgcctcctctgttatgttatctacgtctct 12339385  T
Q  405 cagtttcacagctggtggaatagggcaacatttgttctcctttgtgagctgcatgtaattcaatattcaaccaccacatttataaaggataatggacatg 504  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12339386 cagtttcacagctggtggaatggggcaacatttattctcctttgtgagctgcatgtaattcaatattcaaccaccacatttataaaggataatggacatg 12339485  T
Q  505 g-------gccctcttttatactcgaattctgctcttctcccatcacg 545  Q
    |       |||||||||||| |||||||||||||||||||||||||||    
T  12339486 ggcttcaagccctcttttatgctcgaattctgctcttctcccatcacg 12339533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 8 - 157
Target Start/End: Original strand, 12338628 - 12338777
Alignment:
Q  8 gtttgtgttttgtgtctttgattgcaccatatatacgtatatatacctgatgattatacaagtatcgaacaatttccttcttatgttcgggtcctaaaac 107  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  12338628 gtttgtgttttgtgtctttgattgcatcatatatacgtatatatacctgatgattatacaagtatcgaacaatttccttcttatgttcgggacctaaaac 12338727  T
Q  108 ctcatcaagggatccagtgatatagagaatcattacctgtatataatatt 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12338728 ctcatcaagggatccagtgatatagagaatcattacctgtatataatatt 12338777  T

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Target: chr6; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 291 - 486
Target Start/End: Original strand, 35186058 - 35186252
Alignment:
Q  291 ccagcacattccgcaggccagtgcccatcatgagcttgaattgaggaagagaaactaattgctctttcttattgtagtaatcaatgcctcctctgttatg 390  Q
    |||||| |||| ||||||||||| |||||||||||||||||||||||| ||||||| || || |||| | ||||| || |||||||| ||| ||||||||    
T  35186058 ccagcagattctgcaggccagtggccatcatgagcttgaattgaggaatagaaacttatagcccttt-taattgttgttatcaatgcttcccctgttatg 35186156  T
Q  391 ttatctacgtctctcagtttcacagctggtggaatagggcaacatttgttctcctttgtgagctgcatgtaattcaatattcaaccaccacattta 486  Q
     ||||| | ||||||||||| || ||||||||||| |||| |||||  || || ||| | ||||||||||   ||||||||||| ||||| |||||    
T  35186157 atatcttcttctctcagtttaactgctggtggaatggggctacattgattttctttttttagctgcatgttggtcaatattcaatcaccatattta 35186252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 50 - 149
Target Start/End: Original strand, 35185730 - 35185829
Alignment:
Q  50 atacctgatgattatacaagtatcgaacaatttccttcttatgttcgggtcctaaaacctcatcaagggatccagtgatatagagaatcattacctgtat 149  Q
    ||||||| |||||||| || || ||||||||||||||||||||||  |||||||||||||||||||||||||| || ||||||||   ||||||||||||    
T  35185730 atacctggtgattatataaataccgaacaatttccttcttatgttgaggtcctaaaacctcatcaagggatcctgtaatatagagggccattacctgtat 35185829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 40 - 148
Target Start/End: Original strand, 12306685 - 12306793
Alignment:
Q  40 atacgtatatatacctgatgattatacaagtatcgaacaatttccttcttatgttcgggtcctaaaacctcatcaagggatccagtgatatagagaatca 139  Q
    |||| ||||||||||||||||||||| || || |||||||||||||||||||||||  | ||||||||||||||||  ||||  || ||||||||   ||    
T  12306685 atacttatatatacctgatgattatataaataccgaacaatttccttcttatgttcatgacctaaaacctcatcaatagatcttgtaatatagagggcca 12306784  T
Q  140 ttacctgta 148  Q
    |||||||||    
T  12306785 ttacctgta 12306793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 461
Target Start/End: Original strand, 12308159 - 12308256
Alignment:
Q  364 gtagtaatcaatgcctcctctgttatgttatctacgtctctcagtttcacagctggtggaatagggcaacatttgttctcctttgtgagctgcatgta 461  Q
    |||||||||||||| ||||| || ||  |||||   ||||||| ||| || || ||||||||  ||| ||||| |||||||||| |||||||||||||    
T  12308159 gtagtaatcaatgcttcctcagtaataatatctttatctctcaatttaactgccggtggaattaggccacattggttctcctttttgagctgcatgta 12308256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 160 - 188
Target Start/End: Original strand, 12339142 - 12339170
Alignment:
Q  160 atgatctaattagatggcggtgcaattaa 188  Q
    |||||||||||||||||||||||||||||    
T  12339142 atgatctaattagatggcggtgcaattaa 12339170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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