View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4933-Insertion-2 (Length: 330)
Name: NF4933-Insertion-2
Description: NF4933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4933-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 8 - 227
Target Start/End: Original strand, 7685507 - 7685726
Alignment:
| Q |
8 |
gtttccatcttctatgctctacacatccacattaatttgctaattgttctcattttggaaaataaggttctcattttgttaaagggagatggttgcaagc |
107 |
Q |
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| T |
7685507 |
gtttccatcttctatgctctacacatccacattaatttgctaattgttctcattttggaaaataaggttctcattttgttaaagggagatggttgcaagc |
7685606 |
T |
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| Q |
108 |
aaacaaacaccaaatggaacaaatgaaacgaggaggtggggaatctctgattatgcaaactcagttttgaactaatatttcaaaaccagtttcattaact |
207 |
Q |
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| T |
7685607 |
aaagaaacaccaaatggaacaaatgaaacgaggaggtggggaatctctgattatgcaaactcagttttgaactaatttttcaaaaccagtttcattaact |
7685706 |
T |
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| Q |
208 |
gctattttcgtgaacagact |
227 |
Q |
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| T |
7685707 |
gctattttcgtgaacagact |
7685726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 293 - 330
Target Start/End: Original strand, 7685792 - 7685829
Alignment:
| Q |
293 |
cctgttttaagaactgccgttttataaaaccagtttat |
330 |
Q |
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| T |
7685792 |
cctgttttaagaactgccgttttataaaaccagtttat |
7685829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 216
Target Start/End: Original strand, 23202448 - 23202509
Alignment:
| Q |
157 |
attatgcaaactc--agttttgaactaatatttcaaaaccagtttcattaactgctattttc |
216 |
Q |
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| T |
23202448 |
attatgcaaactcctagttttgaactgatttttcaaaaccagcttcataaactgctactttc |
23202509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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