View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4933-Insertion-6 (Length: 150)
Name: NF4933-Insertion-6
Description: NF4933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4933-Insertion-6 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 143; Significance: 2e-75; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 2e-75
Query Start/End: Original strand, 8 - 150
Target Start/End: Complemental strand, 6185914 - 6185772
Alignment:
| Q |
8 |
ggttatggaattttgaaagatcttgacaatgaatctatgctgaaattcgaaagcattattcaaggtatggcagctagtagtcttcgttgcatcgctttag |
107 |
Q |
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| T |
6185914 |
ggttatggaattttgaaagatcttgacaatgaatctatgctgaaattcgaaagcattattcaaggtatggcagctagtagtcttcgttgcatcgctttag |
6185815 |
T |
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| Q |
108 |
cgtgtacagaagtctcagacgaaaagctaggacatgaaggaga |
150 |
Q |
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| T |
6185814 |
cgtgtacagaagtctcagacgaaaagctaggacatgaaggaga |
6185772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 7e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 7e-38
Query Start/End: Original strand, 8 - 135
Target Start/End: Complemental strand, 4236821 - 4236694
Alignment:
| Q |
8 |
ggttatggaattttgaaagatcttgacaatgaatctatgctgaaattcgaaagcattattcaaggtatggcagctagtagtcttcgttgcatcgctttag |
107 |
Q |
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| T |
4236821 |
ggttttggaatttcgaaagatcttgacaatgaaaccatgttgaaattcgaaaggattattcaaggtatggcggctagtagtcttcgttgcatcgctttag |
4236722 |
T |
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| Q |
108 |
cgtgtacagaagtctcagacgaaaagct |
135 |
Q |
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| T |
4236721 |
cgtatacaaaagttacagacgaagagct |
4236694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.0000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 21847667 - 21847622
Alignment:
| Q |
13 |
tggaattttgaaagatcttgacaatgaatctatgctgaaattcgaa |
58 |
Q |
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| T |
21847667 |
tggaattttgaaagatcttgacaatggatctatgttgaaattcgaa |
21847622 |
T |
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