View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4933_low_1 (Length: 323)
Name: NF4933_low_1
Description: NF4933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4933_low_1 |
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| [»] chr6 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 315; Significance: 1e-178; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 315; E-Value: 1e-178
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 6185960 - 6186282
Alignment:
| Q |
1 |
tttccaatgtgcaaaagctttgttgtcaacattccttctcaacaaaactccacttcttttcttctttgagttgaaagtctcaacttgaataatagaacaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6185960 |
tttccaatgtgcaaaagctttgttgtcaacattccttctcaacaaaactccacttcttttcttctttgagttgaaagtctcaacttgaataatagaacaa |
6186059 |
T |
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| Q |
101 |
ctttttgtcaagtgctccatatccattttcaactccaaaacagcccaagatagtattgctttttctgttggacttcctgaaaactcaaattcagaatccg |
200 |
Q |
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| T |
6186060 |
ctttttgtcaagtgctccatatccattttcaactccaaaacagcccaagatagtattgctttttctgttggacttcctgaaaactcaaattcagaatccg |
6186159 |
T |
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| Q |
201 |
aacctgttttcgatttgtgaacatcaccagttgtattgagagcaactccttctttgatcaattgaagaacagatggatcaacattggaatatgcacctcc |
300 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
6186160 |
aacctgttttcgatttgtgagcatcaccagttgtattgagagcaactccttctttgatcaattgaagaacagatggatcaacattggaatatgcaccttc |
6186259 |
T |
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| Q |
301 |
ttccaatggttcaaaaccgagcc |
323 |
Q |
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| T |
6186260 |
ttccaatggttcaaaaccgagcc |
6186282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 4236867 - 4237189
Alignment:
| Q |
1 |
tttccaatgtgcaaaagctttgttgtcaacattccttctcaacaaaactccacttcttttcttctttgagttgaaagtctcaacttgaataatagaacaa |
100 |
Q |
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||||||||||| || || || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4236867 |
tttccaatgtgaaatagtttggttgtcaacattccttctcaacaatactccacttcttttcttctttgagttgaaagtctcaacttgaagaatagaacaa |
4236966 |
T |
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| Q |
101 |
ctttttgtcaagtgctccatatccattttcaactccaaaacagcccaagatagtattgctttttctgttggacttcctgaaaactcaaattcagaatccg |
200 |
Q |
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||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| | |
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| T |
4236967 |
ctttttgtcaagttctccatatccattttcaattccaaaacagcccaagatagtattgctttttctgttggactaccagaaaactcaaattcagaatcag |
4237066 |
T |
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| Q |
201 |
aacctgttttcgatttgtgaacatcaccagttgtattgagagcaactccttctttgatcaattgaagaacagatggatcaacattggaatatgcacctcc |
300 |
Q |
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|||||| |||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||| ||| | |
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| T |
4237067 |
aacctgatttcaatttgtgaacaccaccagttgtattgagagaaactccttctttgatcaattgaagaacaaatggatcaacatttgaatatgtaccaac |
4237166 |
T |
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| Q |
301 |
ttccaatggttcaaaaccgagcc |
323 |
Q |
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||||| |||||| ||||| |||| |
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| T |
4237167 |
ttccattggttctaaaccaagcc |
4237189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 21847718 - 21847841
Alignment:
| Q |
1 |
tttccaatgtgcaaaagctttgttgtcaacattccttctcaacaaaactccacttcttttcttctttgagttgaaagtctcaacttgaataatagaacaa |
100 |
Q |
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|||||||||| || || |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
21847718 |
tttccaatgtacagtagttttgctgtcgacattccttctcaacaaaactccacttcttttcttctttgagttgaaagtctcaacttgaataatagaataa |
21847817 |
T |
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| Q |
101 |
ctttttgtcaagtgctccatatcc |
124 |
Q |
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| |||||| | ||||||||||||| |
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| T |
21847818 |
ccttttgttaggtgctccatatcc |
21847841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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