View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4933_low_3 (Length: 237)

Name: NF4933_low_3
Description: NF4933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4933_low_3
NF4933_low_3
[»] chr1 (5 HSPs)
chr1 (1-235)||(40689548-40689782)
chr1 (43-107)||(34710335-34710399)
chr1 (43-107)||(34713959-34714023)
chr1 (35-75)||(27509163-27509203)
chr1 (43-107)||(34406576-34406640)
[»] chr7 (2 HSPs)
chr7 (24-100)||(7687870-7687946)
chr7 (30-102)||(40243778-40243850)
[»] chr2 (2 HSPs)
chr2 (22-96)||(41234713-41234787)
chr2 (23-75)||(35505956-35506008)
[»] chr4 (1 HSPs)
chr4 (26-115)||(20926000-20926089)


Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 40689782 - 40689548
Alignment:
Q  1 ctcttgagcaattgctaaagcttttggtttcttgtgacttgctctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40689782 ctcttgagcaattgctaaagcttttggtttcttgtgacttgctctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattca 40689683  T
Q  101 taaacatagaaaccagctcttccagaatccaaagtagcagcttccatgaattttctactgctatattttgtgtagttcatcattccaccatctaaatcat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40689682 taaacatagaaaccagctcttccagaatccaaagtagcagcttccatgaattttctactgctatattttgtgtagttcatcattccaccatctaaatcat 40689583  T
Q  201 cggtgttctttgttgatgattcctttgcttctcct 235  Q
    | |||||||||||||||||||||||||||| ||||    
T  40689582 cagtgttctttgttgatgattcctttgcttgtcct 40689548  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 107
Target Start/End: Complemental strand, 34710399 - 34710335
Alignment:
Q  43 tctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattcataaacat 107  Q
    ||||||||| ||||| |||||| |||||| ||||||| ||||||||||||||||| |||| ||||    
T  34710399 tctatggcctccaagtgcttgagatgaagtgaatgttttgttgcatgttttgcatgcatacacat 34710335  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 107
Target Start/End: Complemental strand, 34714023 - 34713959
Alignment:
Q  43 tctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattcataaacat 107  Q
    ||||||||| ||||| ||||||||||||| ||| ||| | ||||||||||||||| |||| ||||    
T  34714023 tctatggcctccaagtgcttgaaatgaagtgaaagtttttttgcatgttttgcatgcatacacat 34713959  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 27509163 - 27509203
Alignment:
Q  35 tgacttgctctatggccaccaagggcttgaaatgaagggaa 75  Q
    |||||||||||||| |||||||| ||||| |||||||||||    
T  27509163 tgacttgctctatgtccaccaagtgcttggaatgaagggaa 27509203  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 107
Target Start/End: Original strand, 34406576 - 34406640
Alignment:
Q  43 tctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattcataaacat 107  Q
    ||||||||| ||||| ||||||||||||| ||| | | |||| |||||||||||| |||| ||||    
T  34406576 tctatggcctccaagtgcttgaaatgaagtgaaagatttgttacatgttttgcatgcatacacat 34406640  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 7687870 - 7687946
Alignment:
Q  24 ttggtttcttgtgacttgctctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattca 100  Q
    ||||||||||||||||||| ||||| ||||| ||||||||||||||||| |||  ||| || |||||||| ||||||    
T  7687870 ttggtttcttgtgacttgccctatgaccacctagggcttgaaatgaaggaaattgtctattacatgttttacattca 7687946  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 40243778 - 40243850
Alignment:
Q  30 tcttgtgacttgctctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattcata 102  Q
    ||||||| || || ||||||||||||||||||||||| || | |||| || ||||||| ||||||||||||||    
T  40243778 tcttgtggctagccctatggccaccaagggcttgaaaagatgagaattttttgttgcacgttttgcattcata 40243850  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 41234787 - 41234713
Alignment:
Q  22 ttttggtttcttgtgacttgctctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgca 96  Q
    ||||||| ||||||||||||||||||||||||| |  |||||||| |||| ||||  | ||||||||||||||||    
T  41234787 ttttggtctcttgtgacttgctctatggccacctaaagcttgaaaagaagagaattctttgttgcatgttttgca 41234713  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 35506008 - 35505956
Alignment:
Q  23 tttggtttcttgtgacttgctctatggccaccaagggcttgaaatgaagggaa 75  Q
    |||||||||||||||||||||||||| ||||| |  |||||||||||| ||||    
T  35506008 tttggtttcttgtgacttgctctatgtccacccaacgcttgaaatgaatggaa 35505956  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 115
Target Start/End: Original strand, 20926000 - 20926089
Alignment:
Q  26 ggtttcttgtgacttgctctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattcataaacatagaaacca 115  Q
    ||||| ||||||||||| || || ||||| |  |||||||| ||||| || |||||||| ||||||||||||||||||| ||| ||||||    
T  20926000 ggttttttgtgacttgccctgtgaccacccaaagcttgaaaagaaggaaaagttctgttacatgttttgcattcataaatatacaaacca 20926089  T

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