View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4933_low_4 (Length: 223)
Name: NF4933_low_4
Description: NF4933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4933_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 122
Target Start/End: Complemental strand, 24420540 - 24420503
Alignment:
| Q |
85 |
accatctccttcaccccctccaccctatgtctataagt |
122 |
Q |
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| T |
24420540 |
accatctccttcaccccctccaccctatgtctataagt |
24420503 |
T |
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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 122
Target Start/End: Original strand, 24471086 - 24471123
Alignment:
| Q |
85 |
accatctccttcaccccctccaccctatgtctataagt |
122 |
Q |
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||||||||||||||| ||||||||||||||| |||||| |
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| T |
24471086 |
accatctccttcacctcctccaccctatgtccataagt |
24471123 |
T |
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