View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4934-Insertion-10 (Length: 137)
Name: NF4934-Insertion-10
Description: NF4934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4934-Insertion-10 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 118; Significance: 1e-60; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 1e-60
Query Start/End: Original strand, 8 - 137
Target Start/End: Original strand, 11878153 - 11878282
Alignment:
| Q |
8 |
gtaggatcacaatggttgacgttgcggagaatcacaattattttgaacttaatggatttgcatgtttaagtaaatctcattaatttaagttaaactgcct |
107 |
Q |
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| T |
11878153 |
gtaggatcacaatggttgatgttgcggagaatcacaatcattttgaacttaatggattagcatgtttaagtaaatctcattaatttaagttaaactgcct |
11878252 |
T |
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| Q |
108 |
cggctttccggggaaagaaatcataccgca |
137 |
Q |
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| T |
11878253 |
cggctttccggggaaagaaatcataccgca |
11878282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 1e-60
Query Start/End: Original strand, 8 - 137
Target Start/End: Original strand, 11893160 - 11893289
Alignment:
| Q |
8 |
gtaggatcacaatggttgacgttgcggagaatcacaattattttgaacttaatggatttgcatgtttaagtaaatctcattaatttaagttaaactgcct |
107 |
Q |
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| T |
11893160 |
gtaggatcacaatggttgatgttgcggagaatcacaatcattttgaacttaatggattagcatgtttaagtaaatctcattaatttaagttaaactgcct |
11893259 |
T |
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| Q |
108 |
cggctttccggggaaagaaatcataccgca |
137 |
Q |
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| T |
11893260 |
cggctttccggggaaagaaatcataccgca |
11893289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 118; E-Value: 1e-60
Query Start/End: Original strand, 8 - 137
Target Start/End: Original strand, 11895569 - 11895698
Alignment:
| Q |
8 |
gtaggatcacaatggttgacgttgcggagaatcacaattattttgaacttaatggatttgcatgtttaagtaaatctcattaatttaagttaaactgcct |
107 |
Q |
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||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
11895569 |
gtaggatcacaatggttgatgttgcggagaatcacaatcattttgaacttaatggattagcatgtttaagtaaatctcattaatttaagttaaactgcct |
11895668 |
T |
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| Q |
108 |
cggctttccggggaaagaaatcataccgca |
137 |
Q |
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| T |
11895669 |
cggctttccggggaaagaaatcataccgca |
11895698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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