View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4934-Insertion-12 (Length: 235)

Name: NF4934-Insertion-12
Description: NF4934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4934-Insertion-12
NF4934-Insertion-12
[»] chr7 (20 HSPs)
chr7 (8-235)||(22913854-22914072)
chr7 (8-118)||(22805495-22805605)
chr7 (8-118)||(22840238-22840348)
chr7 (8-118)||(22898449-22898559)
chr7 (8-110)||(22831217-22831319)
chr7 (8-118)||(22815213-22815323)
chr7 (12-113)||(22889482-22889583)
chr7 (10-118)||(22876104-22876212)
chr7 (8-60)||(22894130-22894182)
chr7 (8-118)||(22809830-22809940)
chr7 (145-235)||(22840366-22840456)
chr7 (8-118)||(22885778-22885888)
chr7 (148-230)||(22894261-22894343)
chr7 (8-111)||(22880750-22880853)
chr7 (145-235)||(22805623-22805713)
chr7 (145-235)||(22809958-22810048)
chr7 (145-235)||(22842478-22842568)
chr7 (145-235)||(22876230-22876320)
chr7 (145-230)||(22898577-22898662)
chr7 (73-113)||(22858670-22858710)
[»] chr1 (1 HSPs)
chr1 (8-111)||(21150425-21150528)


Alignment Details
Target: chr7 (Bit Score: 159; Significance: 8e-85; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 8 - 235
Target Start/End: Original strand, 22913854 - 22914072
Alignment:
Q  8 aatttggtaaccattttgttggagaaagaacaaaaacaattccatggccactaagattaggaaactcagattttatggcaaaaacaaaagtagtagagaa 107  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22913854 aatttggtaacccttttgttggagaaagaacaaaaacaattccatggccactaagattaggaaactcagattttatggcaaaaacaaaagtagtagagaa 22913953  T
Q  108 agaagatacaccnnnnnnnnnnnnnnnnnntccattgttgaaaactatagggtttggatagaaagcatgacccttttgttgtcttgaatcattggttaat 207  Q
    ||||||||||                    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22913954 agaagataca---------ttactactacttccattgttgaaaactatagggtttggatagaaagcatgacccttttgttgtcttgaatcattggttaat 22914044  T
Q  208 cttagtaaaccatttgaggttaattcag 235  Q
    ||||||||||||||||||||||||||||    
T  22914045 cttagtaaaccatttgaggttaattcag 22914072  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 22805495 - 22805605
Alignment:
Q  8 aatttggtaaccattttgttggagaaagaacaaaaacaattccatggccactaagattaggaaactcagattttatggcaaaaacaaaagtagtagagaa 107  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||| ||| |   ||| | | || | |||||||||| ||||||||||| |||||    
T  22805495 aatttggtagcccttttgttggagaaagaacaaaaacaattccatggccagtaaaaggtggatattgaggtattatggcaaatacaaaagtagttgagaa 22805594  T
Q  108 agaagatacac 118  Q
    |||||| ||||    
T  22805595 agaagacacac 22805605  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 22840238 - 22840348
Alignment:
Q  8 aatttggtaaccattttgttggagaaagaacaaaaacaattccatggccactaagattaggaaactcagattttatggcaaaaacaaaagtagtagagaa 107  Q
    ||||||||| || |||||| ||||||| ||| |||||||||||||||||||||||| | ||| |   ||||||||||| ||| ||||||||||| |||||    
T  22840238 aatttggtagcccttttgtaggagaaataacgaaaacaattccatggccactaagagttggatatgaagattttatggaaaatacaaaagtagttgagaa 22840337  T
Q  108 agaagatacac 118  Q
    |||||| ||||    
T  22840338 agaagaaacac 22840348  T

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Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 22898449 - 22898559
Alignment:
Q  8 aatttggtaaccattttgttggagaaagaacaaaaacaattccatggccactaagattaggaaactcagattttatggcaaaaacaaaagtagtagagaa 107  Q
    ||||||||| || |||||| ||||| | |||||||||||||||||||||||||||| | ||| | | || | |||||||||| ||||||||||| |||||    
T  22898449 aatttggtagcccttttgtaggagagacaacaaaaacaattccatggccactaagagttggatattgaggtcttatggcaaacacaaaagtagttgagaa 22898548  T
Q  108 agaagatacac 118  Q
    |||||| ||||    
T  22898549 agaagaaacac 22898559  T

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Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 22831217 - 22831319
Alignment:
Q  8 aatttggtaaccattttgttggagaaagaacaaaaacaattccatggccactaagattaggaaactcagattttatggcaaaaacaaaagtagtagagaa 107  Q
    ||||||||| || |||||| |||||||||||||||||||||||||||||||||| |   ||| ||   |||||||||| ||| ||||||||||| |||||    
T  22831217 aatttggtagcccttttgtaggagaaagaacaaaaacaattccatggccactaatagatggatacatggattttatggtaaatacaaaagtagttgagaa 22831316  T
Q  108 aga 110  Q
    |||    
T  22831317 aga 22831319  T

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Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 22815213 - 22815323
Alignment:
Q  8 aatttggtaaccattttgttggagaaagaacaaaaacaattccatggccactaagattaggaaactcagattttatggcaaaaacaaaagtagtagagaa 107  Q
    ||||||||| || |||||| ||||||||||||||||||||||| |||||||||| |   ||| | | || | |||| ||||| ||||||||||| |||||    
T  22815213 aatttggtagcccttttgtaggagaaagaacaaaaacaattccttggccactaaaaggtggatattgaggtcttattgcaaacacaaaagtagttgagaa 22815312  T
Q  108 agaagatacac 118  Q
    |||||| ||||    
T  22815313 agaagacacac 22815323  T

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Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 113
Target Start/End: Original strand, 22889482 - 22889583
Alignment:
Q  12 tggtaaccattttgttggagaaagaacaaaaacaattccatggccactaagattaggaaactcagattttatggcaaaaacaaaagtagtagagaaagaa 111  Q
    ||||| || |||||||||||||| ||||||||||||||||||||||| || ||| | | | | || | |||||||||| | ||||||||| |||||||||    
T  22889482 tggtagcccttttgttggagaaataacaaaaacaattccatggccaccaatatttgcatattgaggtattatggcaaataaaaaagtagttgagaaagaa 22889581  T
Q  112 ga 113  Q
    ||    
T  22889582 ga 22889583  T

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Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 118
Target Start/End: Original strand, 22876104 - 22876212
Alignment:
Q  10 tttggtaaccattttgttggagaaagaacaaaaacaattccatggccactaagattaggaaactcagattttatggcaaaaacaaaagtagtagagaaag 109  Q
    ||||||| || |||||| ||||||| |||||||||||||||||  ||||||| | | ||| | | || | |||||||||| ||||||||||| |||||||    
T  22876104 tttggtagcccttttgtaggagaaacaacaaaaacaattccatcaccactaatagttggatattgaggtcttatggcaaatacaaaagtagttgagaaag 22876203  T
Q  110 aagatacac 118  Q
    |||| ||||    
T  22876204 aagacacac 22876212  T

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Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 22894130 - 22894182
Alignment:
Q  8 aatttggtaaccattttgttggagaaagaacaaaaacaattccatggccacta 60  Q
    ||||||||| || |||||| |||||||||||||||||||||||||||||||||    
T  22894130 aatttggtagcccttttgtaggagaaagaacaaaaacaattccatggccacta 22894182  T

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Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 22809830 - 22809940
Alignment:
Q  8 aatttggtaaccattttgttggagaaagaacaaaaacaattccatggccactaagattaggaaactcagattttatggcaaaaacaaaagtagtagagaa 107  Q
    ||||||| | || |||||| || |||| |||||| ||||||||||||  ||||||| | ||| | | || | |||||||||| ||||||||||| |||||    
T  22809830 aatttggcagcccttttgtaggtgaaacaacaaatacaattccatgggaactaagagttggatattgaggtcttatggcaaatacaaaagtagttgagaa 22809929  T
Q  108 agaagatacac 118  Q
    |||||||||||    
T  22809930 agaagatacac 22809940  T

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Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 145 - 235
Target Start/End: Original strand, 22840366 - 22840456
Alignment:
Q  145 ttgaaaactatagggtttggatagaaagcatgacccttttgttgtcttgaatcattggttaatcttagtaaaccatttgaggttaattcag 235  Q
    |||||||||||||| |||||||||||||| || || |||| |||| ||| ||||||||| | ||||||||| ||| |||||| ||| ||||    
T  22840366 ttgaaaactataggatttggatagaaagcttgtcctttttcttgttttgtatcattggtgagtcttagtaagccagttgaggctaactcag 22840456  T

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Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 22885778 - 22885888
Alignment:
Q  8 aatttggtaaccattttgttggagaaagaacaaaaacaattccatggccactaagattaggaaactcagattttatggcaaaaacaaaagtagtagagaa 107  Q
    ||||||||| || |||||| || |||| ||||||||||||||||||||||||| || | ||| | | ||||||||| ||||| | | || |||| |||||    
T  22885778 aatttggtagcccttttgtaggtgaaataacaaaaacaattccatggccactatgagttggatattaagattttatagcaaataaagaattagttgagaa 22885877  T
Q  108 agaagatacac 118  Q
    |||||| ||||    
T  22885878 agaagacacac 22885888  T

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Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 148 - 230
Target Start/End: Original strand, 22894261 - 22894343
Alignment:
Q  148 aaaactatagggtttggatagaaagcatgacccttttgttgtcttgaatcattggttaatcttagtaaaccatttgaggttaa 230  Q
    |||||||||||||||||||||||||||||  | |||| |||| | |  |||||||| | ||||||||| ||||| ||||||||    
T  22894261 aaaactatagggtttggatagaaagcatgtgctttttcttgtttggtgtcattggtgagtcttagtaagccattggaggttaa 22894343  T

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Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 22880750 - 22880853
Alignment:
Q  8 aatttggtaaccattttgttggagaaagaacaaaaacaattccatggccactaagattaggaaactcagattttatggcaaaaacaaaagtagtagagaa 107  Q
    ||||||||| || ||||||||| |||| ||||||||||| ||||||||||| |  |   | | ||  |||||| |||||||| ||||||||||| |||||    
T  22880750 aatttggtagcccttttgttggtgaaacaacaaaaacaagtccatggccacaagtagctgtatacctagatttgatggcaaatacaaaagtagttgagaa 22880849  T
Q  108 agaa 111  Q
    ||||    
T  22880850 agaa 22880853  T

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Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 235
Target Start/End: Original strand, 22805623 - 22805713
Alignment:
Q  145 ttgaaaactatagggtttggatagaaagcatgacccttttgttgtcttgaatcattggttaatcttagtaaaccatttgaggttaattcag 235  Q
    ||||||||||| || ||||||||||||||||||||  ||  ||||  || ||||||||| | ||||||||  |||| ||||||||| ||||    
T  22805623 ttgaaaactattggatttggatagaaagcatgacctattacttgttctgtatcattggtgagtcttagtatgccatctgaggttaactcag 22805713  T

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Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 235
Target Start/End: Original strand, 22809958 - 22810048
Alignment:
Q  145 ttgaaaactatagggtttggatagaaagcatgacccttttgttgtcttgaatcattggttaatcttagtaaaccatttgaggttaattcag 235  Q
    |||||||||| ||| ||||||||||||||||| || ||||  |||  || ||||||||| | ||||||||| |||| || |||||| ||||    
T  22809958 ttgaaaactacaggatttggatagaaagcatgtcctttttcatgttctgtatcattggtgagtcttagtaagccatctggggttaactcag 22810048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 235
Target Start/End: Original strand, 22842478 - 22842568
Alignment:
Q  145 ttgaaaactatagggtttggatagaaagcatgacccttttgttgtcttgaatcattggttaatcttagtaaaccatttgaggttaattcag 235  Q
    ||||||||||| || |||||||| ||||||||||| || | |||| ||| ||||||||| | |||| |||| |||  ||||||||| ||||    
T  22842478 ttgaaaactattggttttggatataaagcatgacctttgtattgttttgtatcattggtgagtcttggtaagccacctgaggttaactcag 22842568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 235
Target Start/End: Original strand, 22876230 - 22876320
Alignment:
Q  145 ttgaaaactatagggtttggatagaaagcatgacccttttgttgtcttgaatcattggttaatcttagtaaaccatttgaggttaattcag 235  Q
    |||||||||||||| |||||||||||| |||| || ||||  | |  || ||||||||| | | ||||||| |||||||||||||| ||||    
T  22876230 ttgaaaactataggatttggatagaaaccatgtcctttttcatattctgtatcattggtgagttttagtaagccatttgaggttaactcag 22876320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 230
Target Start/End: Original strand, 22898577 - 22898662
Alignment:
Q  145 ttgaaaactatagggtttggatagaaagcatgacccttttgttgtcttgaatcattggttaatcttagtaaaccatttgaggttaa 230  Q
    |||||||||||||| |||||||||||||||||  | |||| |||  | | ||||||||| | ||| ||||| ||||| ||||||||    
T  22898577 ttgaaaactataggatttggatagaaagcatgtgctttttcttgcttggtatcattggtgagtctaagtaagccattggaggttaa 22898662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 22858670 - 22858710
Alignment:
Q  73 tcagattttatggcaaaaacaaaagtagtagagaaagaaga 113  Q
    ||||||||||||||||| | ||||||||| |||||||||||    
T  22858670 tcagattttatggcaaataaaaaagtagttgagaaagaaga 22858710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 21150528 - 21150425
Alignment:
Q  8 aatttggtaaccattttgttggagaaagaacaaaaacaattccatggccactaagattaggaaactcagattttatggcaaaaacaaaagtagtagagaa 107  Q
    ||||||||| |  |||||| ||||||| ||||||||||||||||||||||| |||| | ||| | | || | |||||||||| ||||||||||| || ||    
T  21150528 aatttggtagctcttttgtaggagaaataacaaaaacaattccatggccaccaagagttggatattgaggtcttatggcaaatacaaaagtagttgaaaa 21150429  T
Q  108 agaa 111  Q
    ||||    
T  21150428 agaa 21150425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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