View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4934-Insertion-3 (Length: 791)
Name: NF4934-Insertion-3
Description: NF4934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4934-Insertion-3 |
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Alignment Details
Target: chr7 (Bit Score: 509; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 8 - 563
Target Start/End: Original strand, 41878554 - 41879110
Alignment:
| Q |
8 |
attctaactttgtattgtgtaaacctcctataaataaaaaccaccttacactttgtattttatgacatacatcataaacataaataa-ctttctttgtag |
106 |
Q |
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| T |
41878554 |
attctaactttgtattgtataaacctcctataaataaaaaccaccttgcactttgtattgtataacatacatcataaacataaataaactttctttgtag |
41878653 |
T |
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| Q |
107 |
caagcaacaatgaagccaatcgacgagaaacaagagacggtaacaataagagcagtgagtcacgacgaagaaggaaaaaagagagttgaaaaaacagaac |
206 |
Q |
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| T |
41878654 |
caagcagcaatgaagccaatcgacgagaaacaagagacggtaacaataagagcagtgagtcacgacgaagaaggaaaaaagagagttgaaaaaacagaac |
41878753 |
T |
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| Q |
207 |
tcaacacacacaacatagacacaatcaaacatgtggagaagaaactcatcaacaacggtgtccaacgtctggaccgccaccctgtcgacggcataggcgt |
306 |
Q |
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| T |
41878754 |
taaacacacacaacatagacacaatcaaacatgtggagaagaaactcatcaacaacggtgtccaacgtctggaccgccaccctgtcgacggcataggcat |
41878853 |
T |
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| Q |
307 |
tggccgcggaccgccgaagtctggtcgtggtggtaagtttacttgggaaggtccggctgatatggttgataatatgcttgatccggcgccggcggctatg |
406 |
Q |
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| T |
41878854 |
tggccgtggaccgccgaagtctggtcgtggtggtaagtttacttgggaaggtccggctgatatggttgataatatgcttgatccggcgccggcggctatg |
41878953 |
T |
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| Q |
407 |
gatgagaatgatcctaattatgtagacgaggaagatggagaggatgctgctaaggagttgattgttggtgaggttgatgttgctaaggttggtggggaaa |
506 |
Q |
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| T |
41878954 |
gatgagaatgatcctaattatgtagacgaggaagatggagaggatgctgctaaggagttgattgttggtgatgttgatgttgctaaggttggtggggaaa |
41879053 |
T |
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| Q |
507 |
gagatggtgttgctagagttgatgttcatcctcgtttggttgctaattaatctcttc |
563 |
Q |
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| T |
41879054 |
gagatggtgttgctagagttgatgttgatcctcgtttggttgctaattaatctcttc |
41879110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 630 - 791
Target Start/End: Original strand, 41879177 - 41879337
Alignment:
| Q |
630 |
ggaatgtgtgatccgttgtaaatataatcaagcaagaatgtaacagnnnnnnnnaaatttccttattaatcttttgcagaatccagagtgaaacagataa |
729 |
Q |
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| T |
41879177 |
ggaatgtgtgatccgttgtaaatataatcaagcaagaatgtaacagtttgttt-aaatttccttattaatcttttgcagaatccagagtgaaacagataa |
41879275 |
T |
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| Q |
730 |
aagaaataataggaactacagggtttattatttgcatatctcaaccagagtgtttctctata |
791 |
Q |
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| T |
41879276 |
aagaaataataggaactacagggtttattatttgcatatctcaaccagagtgtttctctata |
41879337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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