View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4934-Insertion-5 (Length: 527)
Name: NF4934-Insertion-5
Description: NF4934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4934-Insertion-5 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 468; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 8 - 527
Target Start/End: Original strand, 36330665 - 36331193
Alignment:
| Q |
8 |
tgcattaccttgaaaagtctcagtaggcataccagtaattccttgtatcatcctcacatgtcttccctcagcatttgcatccctctttgttccaatgtaa |
107 |
Q |
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| T |
36330665 |
tgcattaccttgaaaagtctcagtaggcataccagtaattccttctatcatcctcacatgtcttccctcagcatttgcatccctctttgttccaatgtaa |
36330764 |
T |
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| Q |
108 |
caatcatcgtcattctcgaactcattatcagattgtacattctcatcctaaaaat------agaaatagaagggatgagttgcctgaaacatgaataatt |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
36330765 |
caatcatcgtcattctcgaactcattatcagattgtacattctcatcctaaaaatagaaatagaaatagaagggatgagttgcctgaaacatgaagaatt |
36330864 |
T |
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| Q |
202 |
atattggcttatttgactttatcgtagtttatacatatgatcgattaatgataattacttaacgaaactatttctatccaaacagagcgttaaaaggaaa |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
36330865 |
atattggcttatttgactttatcgtagtttatacatatgatcgattaatgataattacttaaggaaactatttctatccaaacagagcgttaaaaggaaa |
36330964 |
T |
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| Q |
302 |
agctaccttgaaatgacaaggaatgcgatcctttacggaaacagggtcgtagcgcttattcttcatagactcttcctctgcatcttgttcctcgtattca |
401 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36330965 |
agctaccttgaaatgagaaggaatgcgatcctttacggaaacagggtcgtagcgcttattcttcatagactcttcctctgcatcttgttcctcgtattca |
36331064 |
T |
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| Q |
402 |
ta---aacatcagtggtggcttcatcgaaatggacattggtttgaatctgtttgttcaaagatgaaggcaaacgaggattggttttcgactttttacttc |
498 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
36331065 |
taaacaacatcagtggtggcttcatcgaaatggacattggtttgaatctgtttgttcaaagatgaaggcgaacgaggattggttttcgactttttacttc |
36331164 |
T |
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| Q |
499 |
ggaggttggtgccgttcatctgttttcgt |
527 |
Q |
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| T |
36331165 |
ggaggttggtgtcgttcatctgttttcgt |
36331193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 440 - 476
Target Start/End: Original strand, 44371826 - 44371862
Alignment:
| Q |
440 |
ttgaatctgtttgttcaaagatgaaggcaaacgagga |
476 |
Q |
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| T |
44371826 |
ttgaatctcttttttcaaagatgaaggcaaacgagga |
44371862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 440 - 476
Target Start/End: Original strand, 44380681 - 44380717
Alignment:
| Q |
440 |
ttgaatctgtttgttcaaagatgaaggcaaacgagga |
476 |
Q |
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|||||||| ||| |||||||||||||||||||||||| |
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| T |
44380681 |
ttgaatctcttttttcaaagatgaaggcaaacgagga |
44380717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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