View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4934-Insertion-7 (Length: 451)
Name: NF4934-Insertion-7
Description: NF4934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4934-Insertion-7 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 417; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 7 - 451
Target Start/End: Original strand, 28752834 - 28753278
Alignment:
| Q |
7 |
agaagctgtaccagcagcttctatagaggttaccacttcagtctcaccaccatgctcttgttctaaagataatcccagctccaggaaaacagaatcgttg |
106 |
Q |
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| T |
28752834 |
agaagctgtagcagcagcttctatagaggttaccacttcagtctcaccaccatgctcttgttctaaagataatcccagctccagaaaaacagaatcgttg |
28752933 |
T |
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| Q |
107 |
cagccggtgaattttttaaattcagcaaagaaatatatcatgtcacttgagcaactttctcctgcaggatctgtggcaactaagcaaatctgagactgca |
206 |
Q |
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| T |
28752934 |
cagccggtgaattttttaaattcagcaaagaaatatatcatgtcacttgagcaactttctcctgcaggatctgtggcagctaagcaaatctgagactgca |
28753033 |
T |
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| Q |
207 |
tctcaccaatcgatacattctgtaattgggcaaggtttccagtttggcaattattgagacaaccatcagaagtattgtaaggtaccttccgttttctacc |
306 |
Q |
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| T |
28753034 |
tctcaccaatcgatacattctgtaattgggcaaggtttccagtttggcaattattgagacaaccatcagaagtattgtaaggtaccttccgtttcctacc |
28753133 |
T |
|
| Q |
307 |
acgccgtgaagttgaattattagcagcaatttgggaattattgaaacaaccattagaagtattgtaagctgcctttggtttcctgccacgccgtgaagtt |
406 |
Q |
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| T |
28753134 |
acgccgtgaagttgaattattagcagcaatttgggaattattgaaacaaccattagaagtattgtaagctgtcttcagtttcctgccacgccgtgaagtt |
28753233 |
T |
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| Q |
407 |
gaattattagcagcaatttgggaattgttgaaacaatcattagga |
451 |
Q |
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| T |
28753234 |
gaattattagcagcaatttgggaattgttgaaacaatcattagga |
28753278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 249 - 431
Target Start/End: Original strand, 28753163 - 28753345
Alignment:
| Q |
249 |
tttggcaattattgagacaaccatcagaagtattgtaaggtaccttccgttttctaccacgccgtgaagttgaattattagcagcaatttgggaattatt |
348 |
Q |
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| T |
28753163 |
tttgggaattattgaaacaaccattagaagtattgtaagctgtcttcagtttcctgccacgccgtgaagttgaattattagcagcaatttgggaattgtt |
28753262 |
T |
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| Q |
349 |
gaaacaaccattagaagtattgtaagctgcctttggtttcctgccacgccgtgaagttgaattattagcagcaatttgggaat |
431 |
Q |
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| T |
28753263 |
gaaacaatcattaggagtattataagctgcctttggtttccttccacgccgtgaagttgatatatcatcagcaatttgggaat |
28753345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 409
Target Start/End: Original strand, 28753250 - 28753410
Alignment:
| Q |
249 |
tttggcaattattgagacaaccatcagaagtattgtaaggtaccttccgttttctaccacgccgtgaagttgaattattagcagcaatttgggaattatt |
348 |
Q |
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| T |
28753250 |
tttgggaattgttgaaacaatcattaggagtattataagctgcctttggtttccttccacgccgtgaagttgatatatcatcagcaatttgggaatgatg |
28753349 |
T |
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| Q |
349 |
gaaacaaccattagaagtattgtaagctgcctttggtttcctgccacgccgtgaagttgaa |
409 |
Q |
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| T |
28753350 |
aaaataatcatatgaagtatcatacgctgccttccgtttcctgccacgtcgtgaaattgaa |
28753410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 161; Significance: 1e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 7 - 431
Target Start/End: Complemental strand, 44865919 - 44865495
Alignment:
| Q |
7 |
agaagctgtaccagcagcttctatagaggttaccacttcagtctcaccaccatgctcttgttctaaagataatcccagctccaggaaaacagaatcgttg |
106 |
Q |
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| T |
44865919 |
agaagatgtagcagcagcttctatagaggttactactccagtctcaccaccatgctcttgttctaaagacaatccatgctctagaaaaacagaatcgtta |
44865820 |
T |
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| Q |
107 |
cagccggtgaattttttaaattcagcaaagaaatatatcatgtcacttgagcaactttctcctgcaggatctgtggcaactaagcaaatctgagactgca |
206 |
Q |
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| T |
44865819 |
cggccggtaaacttttcaaattctgaaaagaagtatatcatgtcactggagaaactttctcctgcaggatccttggcagctaagcatagttgagactgca |
44865720 |
T |
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| Q |
207 |
tctcaccaatcgatacattctgtaattgggcaaggtttccagtttggcaattattgagacaaccatcagaagtattgtaaggtaccttccgttttctacc |
306 |
Q |
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| T |
44865719 |
tctcatctaccgatacattctgtaactggatgtggtttccagtttggtaattattggaacaatcatcaaaagcattgtaagctagctttcgtttccttcc |
44865620 |
T |
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| Q |
307 |
acgccgtgaagttgaattattagcagcaatttgggaattattgaaacaaccattagaagtattgtaagctgcctttggtttcctgccacgccgtgaagtt |
406 |
Q |
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| T |
44865619 |
tcgccgtgaagttgagttattaccagaaatttggtaactatggaaatcatcgtcagaagtatcataagctgccttccgtttcgtgccacacagtgaagtt |
44865520 |
T |
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| Q |
407 |
gaattattagcagcaatttgggaat |
431 |
Q |
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| T |
44865519 |
gatttatcatcagcaatttgggaat |
44865495 |
T |
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