View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4934-Insertion-9 (Length: 58)

Name: NF4934-Insertion-9
Description: NF4934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4934-Insertion-9
NF4934-Insertion-9
[»] chr3 (11 HSPs)
chr3 (6-54)||(5251057-5251105)
chr3 (6-58)||(5268944-5268996)
chr3 (10-58)||(4388032-4388080)
chr3 (10-58)||(8455549-8455597)
chr3 (10-58)||(5281546-5281594)
chr3 (10-42)||(5299623-5299655)
chr3 (10-58)||(6479068-6479116)
chr3 (10-58)||(6519248-6519296)
chr3 (10-58)||(6553524-6553572)
chr3 (10-58)||(6736885-6736933)
chr3 (10-58)||(8590624-8590672)
[»] chr4 (1 HSPs)
chr4 (10-57)||(41068416-41068463)
[»] scaffold0425 (1 HSPs)
scaffold0425 (10-58)||(6563-6611)


Alignment Details
Target: chr3 (Bit Score: 49; Significance: 7e-20; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-20
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 5251057 - 5251105
Alignment:
Q  6 cataatgtttaagatcatcaagccacttcttcacgtacatgctttggta 54  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5251057 cataatgtttaagatcatcaagccacttcttcacgtacatgctttggta 5251105  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-20
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 5268944 - 5268996
Alignment:
Q  6 cataatgtttaagatcatcaagccacttcttcacgtacatgctttggtactgc 58  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5268944 cataatgtttaagatcatcaagccacttcttcacgtacatgctttggaactgc 5268996  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-17
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 4388080 - 4388032
Alignment:
Q  10 atgtttaagatcatcaagccacttcttcacgtacatgctttggtactgc 58  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  4388080 atgtttaagatcatcaagccacttcttcacggacatgctttggtactgc 4388032  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 8455549 - 8455597
Alignment:
Q  10 atgtttaagatcatcaagccacttcttcacgtacatgctttggtactgc 58  Q
    |||||||||||||||||||||||||||||| ||  || |||||||||||    
T  8455549 atgtttaagatcatcaagccacttcttcacatatttgttttggtactgc 8455597  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.00000006
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 5281546 - 5281594
Alignment:
Q  10 atgtttaagatcatcaagccacttcttcacgtacatgctttggtactgc 58  Q
    ||||||||||||||||||||||||||| || ||  |||||| |||||||    
T  5281546 atgtttaagatcatcaagccacttctttacatatgtgcttttgtactgc 5281594  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.00000006
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 5299623 - 5299655
Alignment:
Q  10 atgtttaagatcatcaagccacttcttcacgta 42  Q
    ||||||||||||| |||||||||||||||||||    
T  5299623 atgtttaagatcaccaagccacttcttcacgta 5299655  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.00000006
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 6479116 - 6479068
Alignment:
Q  10 atgtttaagatcatcaagccacttcttcacgtacatgctttggtactgc 58  Q
    ||||||||| | |||||||||||||||||| || ||| |||||||||||    
T  6479116 atgtttaagtttatcaagccacttcttcacatatatgatttggtactgc 6479068  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.00000006
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 6519296 - 6519248
Alignment:
Q  10 atgtttaagatcatcaagccacttcttcacgtacatgctttggtactgc 58  Q
    ||||||||| |||||||||||||||||||| ||  || |||||||||||    
T  6519296 atgtttaagttcatcaagccacttcttcacatatttgttttggtactgc 6519248  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.00000006
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 6553572 - 6553524
Alignment:
Q  10 atgtttaagatcatcaagccacttcttcacgtacatgctttggtactgc 58  Q
    ||||||||| |||||||||||||||||||| ||  || |||||||||||    
T  6553572 atgtttaagttcatcaagccacttcttcacatatttgttttggtactgc 6553524  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.00000006
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 6736885 - 6736933
Alignment:
Q  10 atgtttaagatcatcaagccacttcttcacgtacatgctttggtactgc 58  Q
    ||||||||| |||||||||||||||||||| ||  || |||||||||||    
T  6736885 atgtttaagttcatcaagccacttcttcacatatttgttttggtactgc 6736933  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.00000006
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 8590624 - 8590672
Alignment:
Q  10 atgtttaagatcatcaagccacttcttcacgtacatgctttggtactgc 58  Q
    ||||||||| |||||||||||||||||||| ||  ||||| ||||||||    
T  8590624 atgtttaagttcatcaagccacttcttcacatatttgcttcggtactgc 8590672  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 41068463 - 41068416
Alignment:
Q  10 atgtttaagatcatcaagccacttcttcacgtacatgctttggtactg 57  Q
    ||||||||| ||||||||||| |||||||| || ||||||||||||||    
T  41068463 atgtttaagttcatcaagccaattcttcacatatatgctttggtactg 41068416  T

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Target: scaffold0425 (Bit Score: 29; Significance: 0.00000006; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 29; E-Value: 0.00000006
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 6611 - 6563
Alignment:
Q  10 atgtttaagatcatcaagccacttcttcacgtacatgctttggtactgc 58  Q
    ||||||||| |||||||||||||||||||| ||  || |||||||||||    
T  6611 atgtttaagttcatcaagccacttcttcacatatttgttttggtactgc 6563  T

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