View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4934_high_1 (Length: 707)
Name: NF4934_high_1
Description: NF4934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4934_high_1 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 597; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 597; E-Value: 0
Query Start/End: Original strand, 12 - 691
Target Start/End: Original strand, 28752161 - 28752841
Alignment:
| Q |
12 |
atcatcaattagtgagctactcaattctattgattagcatgctagccaagttagtaactcatcaaaatactaaaactaagagtgtcgatcgatattcaca |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28752161 |
atcatcaattagtgagctactcaattctattgattagcatgctagccaagttagtaactcatcaaaatactaaaactaagagtgtcgatcgatattcaca |
28752260 |
T |
|
| Q |
112 |
taaa-cttaccactaattgtcaaggcatcaaactgcgggggcatccacagaacnnnnnnnnnnnnnnnnnnnnctgcctcgctttcctgttcctttcttt |
210 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
28752261 |
taaaacttaccactaattgtcaaggcatcaaactgtgggggcatccacagaacttttttcttttttgctttttctgcctcgctttcctgttcctttcttt |
28752360 |
T |
|
| Q |
211 |
ggtgtacggggcaaaatcctgaggcggtaactttgtagtgaaggtccaaatatgctatactttccagcactactaaaagcagtttctgcatcacagcgtc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28752361 |
ggtgtacggggcaaaatcctgaggcggtaactttgtagtgaaggtccaaatatgctatactttccagcactactaaaagcagtttctgcatcacagcgtc |
28752460 |
T |
|
| Q |
311 |
ttttgaaaacaactctagcgcggttagtcctctctagaagctcagtctttgattcaactagcggcccaaagcggccaaagatcttgttgagatccgctgt |
410 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28752461 |
ttttgaaaacaactctagcacggttagtcctctctagaagctcagtctttgattcaactagcggcccaaagcggccaaagatcttgttgagatccgctgt |
28752560 |
T |
|
| Q |
411 |
tgaaggaaccgaatccaagtttgtaaatttcagggtaagagaagtgggagaactctcattcacattttccacatggttggaaggttctgatccgagattt |
510 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
28752561 |
tgaaggaactgaatccaagtttgtaaatttcagggtaagagaagtgggagaactctcattcacattttccacatagttggaaggttctgatccgagattt |
28752660 |
T |
|
| Q |
511 |
ccattggattcttgatgcattaaacccaaatttgggctaatttcagcagctggcaaaagttcctctctttcattctggttttttaacagtgtctcctcat |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28752661 |
ccattggattcttgatgcattaaacccaaatttgggctaatttcagcagctggcaaaagttcctctctttcattctggttttttaacagtgtctcctcat |
28752760 |
T |
|
| Q |
611 |
cagaaatgctttgaattattctatcagtccaataagaatcattgcaaagcaccattggtgttggtgttgacatagaagctg |
691 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28752761 |
cagaaatgctttgaattattctatcagtccaataagaatcattgcaaagcaccattggtgttggtgttgacatagaagctg |
28752841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 284 - 437
Target Start/End: Original strand, 28749488 - 28749641
Alignment:
| Q |
284 |
taaaagcagtttctgcatcacagcgtcttttgaaaacaactctagcgcggttagtcctctctagaagctcagtctttgattcaactagcggcccaaagcg |
383 |
Q |
| |
|
|||| ||||||||||||| ||| ||||||| |||||||||||| | || |||||| || ||| || |||||||| |||||| ||| || |||||| | |
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|
| T |
28749488 |
taaatgcagtttctgcattacaacgtctttggaaaacaactctggtgcctttagtcttcggtagcagttcagtcttccattcaattaggggtccaaagtg |
28749587 |
T |
|
| Q |
384 |
gccaaagatcttgttgagatccgctgttgaaggaaccgaatccaagtttgtaaa |
437 |
Q |
| |
|
| ||| || ||||| ||| || ||||||| ||| ||||| ||||||||||| |
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|
| T |
28749588 |
acaaaaaatattgttaagaaacgttgttgaacgaatggaatcgaagtttgtaaa |
28749641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 10 - 688
Target Start/End: Complemental strand, 44866599 - 44865915
Alignment:
| Q |
10 |
acatcatcaattagtgagctactcaattctattgattagcatgctagccaagttagtaactcatcaaaatactaaaactaagagtgtcgatcgatattca |
109 |
Q |
| |
|
||||| |||||||||||||||||||||| ||| |||||| |||| ||||| | | | |||||||||||||||||||||||| ||||| ||||| |||| |
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|
| T |
44866599 |
acatcgtcaattagtgagctactcaattttatgtattagcttgctcgccaaatcaacagctcatcaaaatactaaaactaagactgtcggtcgatgttca |
44866500 |
T |
|
| Q |
110 |
cataaacttaccactaattgtcaaggcatcaaactgcgggggcatc------cacagaacnnnnnnnnnnnnnnnnnnnnctgcctcgctttcctgttcc |
203 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| || |||||| |||||||| || |||||||||||||| | |
|
|
| T |
44866499 |
cataaactcaccactaattgtcaaggcatcaaactgtggcggcatcggcatccacagaacttttttcttttttgctttttctacctcgctttcctgtgct |
44866400 |
T |
|
| Q |
204 |
tttctttggtgtacggggcaaaatcctgaggcggtaactttgtagtgaaggtccaaatatgctatactttccagcactactaaaagcagtttctgcatca |
303 |
Q |
| |
|
||||| ||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
44866399 |
tttctctggtgtacgaggcaaaatcttgaggcggtaactttgtaatgaaggtccaaatatgctatactttccagcactgctaaaagcagtttctgcatca |
44866300 |
T |
|
| Q |
304 |
cagcgtcttttgaaaacaactctagcgcggttagtcctctctagaagctcagtctttgattcaactagcggcccaaagcggccaaagatcttgttgagat |
403 |
Q |
| |
|
|| || || ||||||||| | |||||||||||| |||| ||||| | |||||||||||||| ||| | ||||||||||||||||||||||||||||| |
|
|
| T |
44866299 |
caatatcgttcaaaaacaactttggcgcggttagtcttctcgagaagtttagtctttgattcaattagtgtcccaaagcggccaaagatcttgttgagat |
44866200 |
T |
|
| Q |
404 |
ccgctgttgaaggaaccgaatccaagtttgtaaatttcagggtaagagaagtgggagaactctcattcacattttccacatggttggaaggttctgatcc |
503 |
Q |
| |
|
||| ||||| |||||| ||||||||||||||||||||||| ||||||||||| |||||||| || ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
44866199 |
ccgttgttgtaggaactgaatccaagtttgtaaatttcagagtaagagaagttggagaactatcgttcacatgttccacatggttggaaggttctgatcc |
44866100 |
T |
|
| Q |
504 |
gagatttccattggattcttgatgcattaaacccaaatttgggctaatttcagcagctggcaaaagttcctctctttcattctggttttttaacagtgtc |
603 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||||||||||| ||||| |||| |||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
44866099 |
aagatttccattggtttcttgatgcattaaacccaaaccagggctaatttcggcagcgggcataagttcatctctttcattctggtttttcaacagtgtc |
44866000 |
T |
|
| Q |
604 |
tcctcatcagaaatgctttgaattattctatcagtccaataagaatcattgcaaagcaccattggtgttggtgttgacatagaag |
688 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
44865999 |
tcctcttcagaaatgctttgaattattctatcagtccaataagaatcattgcaaagctccattggtgtcggtgttgacatagaag |
44865915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 12 - 140
Target Start/End: Original strand, 45246864 - 45246993
Alignment:
| Q |
12 |
atcatcaattagtgagctactcaattctattgattagcatgctagccaagttagtaactcatcaaaatactaaaactaagagtgtcgatcg-atattcac |
110 |
Q |
| |
|
|||||||| ||| || ||||| ||||||| ||||| |||||||| || ||| ||||||||||| |||||||||||||| ||||||| | |||||||| |
|
|
| T |
45246864 |
atcatcaacaagtaagttactccattctatgtattaggatgctagcaaaattaaaaactcatcaaagtactaaaactaagactgtcgattgaatattcac |
45246963 |
T |
|
| Q |
111 |
ataaacttaccactaattgtcaaggcatca |
140 |
Q |
| |
|
||||||| |||||||| ||||||||||||| |
|
|
| T |
45246964 |
ataaactcaccactaactgtcaaggcatca |
45246993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 630 - 688
Target Start/End: Original strand, 45247006 - 45247064
Alignment:
| Q |
630 |
tctatcagtccaataagaatcattgcaaagcaccattggtgttggtgttgacatagaag |
688 |
Q |
| |
|
|||||||||||||||||| |||| ||||||| ||| |||||||||| |||||||||||| |
|
|
| T |
45247006 |
tctatcagtccaataagagtcatagcaaagctccactggtgttggttttgacatagaag |
45247064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 630 - 688
Target Start/End: Original strand, 45249382 - 45249440
Alignment:
| Q |
630 |
tctatcagtccaataagaatcattgcaaagcaccattggtgttggtgttgacatagaag |
688 |
Q |
| |
|
||||||||| ||||||||||||| ||||||| ||| |||| |||||||||||||||||| |
|
|
| T |
45249382 |
tctatcagttcaataagaatcatagcaaagctccactggttttggtgttgacatagaag |
45249440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 184 - 419
Target Start/End: Original strand, 19714015 - 19714247
Alignment:
| Q |
184 |
ctgcctcgctttcctgttcctttctttggtgtacggggcaaaatcctgaggcggtaactttgtagtgaaggtccaaatatgctatactttccagcactac |
283 |
Q |
| |
|
|||||||||||||| ||||||||||||||| || | ||||||| | |||| | | |||||||||| || |||||| | ||||||||| | | |
|
|
| T |
19714015 |
ctgcctcgctttccggttcctttctttggtttatgaggcaaaaccttgagatgaaagctttgtagtgcagatccaaaa---cgatactttccgatatgag |
19714111 |
T |
|
| Q |
284 |
taaaagcagtttctgcatcacagcgtcttttgaaaacaactctagcgcggttagtcctctctagaagctcagtctttgattcaactagcggcccaaagcg |
383 |
Q |
| |
|
|||||||||||||||||||||| ||| | | |||||||||||| ||| |||||| || |||| | |||||||||||||||| || || ||||||| |
|
|
| T |
19714112 |
taaaagcagtttctgcatcacaacgtttctcgaaaacaactctgacgctattagtcttcgctagcaattcagtctttgattcaattaagggaccaaagca |
19714211 |
T |
|
| Q |
384 |
gccaaagatcttgttgagatccgctgttgaaggaac |
419 |
Q |
| |
|
|| || | |||||||||| |||||||||||||| |
|
|
| T |
19714212 |
gcataaaagcttgttgagaatagctgttgaaggaac |
19714247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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