View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4934_high_13 (Length: 348)
Name: NF4934_high_13
Description: NF4934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4934_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 9e-98; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 20 - 244
Target Start/End: Complemental strand, 1430908 - 1430688
Alignment:
| Q |
20 |
ctccaaaatatatgtttgttacggcacacagtatataataagtcctcgtaggctagcccttgaacaatatttatctaccgaaagctctctctttatactt |
119 |
Q |
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| T |
1430908 |
ctccaaaatatatgtttgttacggcacacagtatataa---gtcctcgtaggctagcccttgaacaatatttatctaccgaaagctctctctcta--ctt |
1430814 |
T |
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| Q |
120 |
tataacaagaattctaaaagaa-tggaagatcatcaagtaattattcctctgatgggagaatttaattgctctgatccaatcacaaggtactccatccct |
218 |
Q |
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| T |
1430813 |
aataacaagaattctaaaaaaaatggaagatcatcaagtaattattcctctgatgggagaatttaattgctctgatccaatcacaaggtactccatccct |
1430714 |
T |
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| Q |
219 |
tttactttttcctcctataattttat |
244 |
Q |
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|||||||||||||||||||||||||| |
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| T |
1430713 |
tttactttttcctcctataattttat |
1430688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 239 - 332
Target Start/End: Complemental strand, 1430463 - 1430366
Alignment:
| Q |
239 |
ttttatttattttcaattcgtatgtatctta----tgaacgtatattttgtttacagcgattgtgaaaaagacatgaaagaagtgattgtgatagaag |
332 |
Q |
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| T |
1430463 |
ttttatttattttcaattcgtatgtatcttaattatgaacgtatattttgtttacagcgattgtgaaaaagacatgaaagaagtgattgtgatagaag |
1430366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 1462550 - 1462606
Alignment:
| Q |
143 |
ggaagatcatcaagtaattattcctctgatgggagaatttaattgctctgatccaat |
199 |
Q |
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| T |
1462550 |
ggaagataatcaagtaattattcctctgatgggagaatccaatcgctctgaaccaat |
1462606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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