View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4934_high_14 (Length: 348)

Name: NF4934_high_14
Description: NF4934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4934_high_14
NF4934_high_14
[»] chr5 (9 HSPs)
chr5 (1-329)||(23737819-23738146)
chr5 (1-329)||(19208967-19209294)
chr5 (79-329)||(43300188-43300436)
chr5 (64-329)||(41958456-41958717)
chr5 (51-184)||(32863630-32863763)
chr5 (51-199)||(3174146-3174298)
chr5 (51-184)||(10572685-10572822)
chr5 (92-180)||(22273148-22273236)
chr5 (269-329)||(28450488-28450548)
[»] chr8 (16 HSPs)
chr8 (6-329)||(43916043-43916363)
chr8 (55-199)||(1668095-1668239)
chr8 (55-199)||(16658810-16658954)
chr8 (57-199)||(38521211-38521353)
chr8 (51-184)||(22432291-22432428)
chr8 (51-184)||(29182575-29182712)
chr8 (51-158)||(27576745-27576856)
chr8 (92-199)||(22014862-22014969)
chr8 (55-177)||(6786427-6786550)
chr8 (92-207)||(11472333-11472451)
chr8 (51-184)||(774680-774818)
chr8 (92-182)||(42808694-42808784)
chr8 (62-121)||(34212961-34213020)
chr8 (179-213)||(11472225-11472259)
chr8 (92-177)||(33360404-33360489)
chr8 (129-184)||(780362-780417)
[»] chr7 (7 HSPs)
chr7 (64-329)||(44660309-44660571)
chr7 (51-184)||(6472244-6472381)
chr7 (51-184)||(9371789-9371926)
chr7 (51-184)||(21358022-21358159)
chr7 (51-148)||(35013010-35013111)
chr7 (92-150)||(31419287-31419345)
chr7 (62-121)||(12003038-12003099)
[»] chr4 (14 HSPs)
chr4 (55-199)||(21355857-21356001)
chr4 (55-199)||(13740237-13740381)
chr4 (55-199)||(23218205-23218349)
chr4 (57-190)||(45143964-45144097)
chr4 (57-190)||(45152733-45152866)
chr4 (51-184)||(21604408-21604545)
chr4 (51-184)||(46164366-46164503)
chr4 (51-184)||(47825890-47826027)
chr4 (4-186)||(54785186-54785371)
chr4 (51-184)||(8432980-8433117)
chr4 (124-230)||(3187535-3187646)
chr4 (92-207)||(38115468-38115586)
chr4 (55-197)||(33753948-33754092)
chr4 (92-182)||(14799999-14800089)
[»] chr2 (3 HSPs)
chr2 (55-199)||(3935357-3935501)
chr2 (53-184)||(25697567-25697702)
chr2 (55-148)||(38978409-38978502)
[»] scaffold0393 (1 HSPs)
scaffold0393 (57-199)||(11154-11296)
[»] chr3 (6 HSPs)
chr3 (55-190)||(21239425-21239560)
chr3 (55-190)||(52893421-52893556)
chr3 (55-148)||(2338850-2338943)
chr3 (51-184)||(9456396-9456533)
chr3 (92-180)||(40922983-40923071)
chr3 (92-180)||(2733800-2733888)
[»] chr1 (11 HSPs)
chr1 (62-231)||(17480946-17481109)
chr1 (51-184)||(29599251-29599388)
chr1 (51-184)||(324661-324798)
chr1 (51-148)||(48184221-48184322)
chr1 (92-203)||(6165018-6165131)
chr1 (92-184)||(26355032-26355125)
chr1 (92-203)||(16764506-16764619)
chr1 (102-184)||(26014504-26014586)
chr1 (92-194)||(10801546-10801650)
chr1 (124-231)||(52801489-52801601)
chr1 (165-207)||(20727521-20727562)
[»] scaffold1160 (1 HSPs)
scaffold1160 (55-148)||(2457-2550)
[»] chr6 (4 HSPs)
chr6 (51-184)||(32397214-32397352)
chr6 (51-148)||(9302991-9303087)
chr6 (92-180)||(7171054-7171142)
chr6 (62-121)||(14654645-14654704)
[»] scaffold1300 (2 HSPs)
scaffold1300 (92-207)||(900-1018)
scaffold1300 (166-213)||(755-802)
[»] scaffold1084 (2 HSPs)
scaffold1084 (92-207)||(1230-1348)
scaffold1084 (179-213)||(1434-1468)
[»] scaffold0285 (1 HSPs)
scaffold0285 (92-203)||(8352-8465)
[»] scaffold0054 (1 HSPs)
scaffold0054 (92-203)||(2890-3003)
[»] scaffold0005 (1 HSPs)
scaffold0005 (92-182)||(39638-39728)
[»] scaffold0026 (1 HSPs)
scaffold0026 (172-212)||(56699-56738)


Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 23737819 - 23738146
Alignment:
Q  1 tcacctccttctccatccatcattgttgcatcctgctctgtttttcggtgttgattcttcagtttagagagctatctccatctctgttcataaaccctaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||| ||||||| | ||||||||||||    
T  23737819 tcacctccttctccatccatcattgttgcatcctgctctgtttt-cgatgttgattcttcagtttaaagagctatctgcatctctctccataaaccctaa 23737917  T
Q  101 ttgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttcaaatctaattcttctttaatgatttcatgttctttagttgattgccatgagttt 200  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  23737918 ttgttgtaaattgtaaggtaacatgaaattgaatgtaatttccttcaaatctgattcttctttaatgattacatgttctttagttgattgccatgagttt 23738017  T
Q  201 tccatctgttgttgttaaacctagttgattagtgattaaatatgtcttgtttgctgtatgaaatgttctgtgaaataggttatcaaaaaatttatgaaag 300  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  23738018 tccatctgttgttgttaaacctagttgattagtgattacatatgtcttgtttgctgtatgaaatgttctgtgaaataggttatcaaaaagtttatgaaag 23738117  T
Q  301 tttgtgtctttatgctaaaatggtggttg 329  Q
    | |||||||||||||||||||||||||||    
T  23738118 tctgtgtctttatgctaaaatggtggttg 23738146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 19209294 - 19208967
Alignment:
Q  1 tcacctccttctccatccatcattgttgcatcctgctctgtttttcggtgttgattcttcagtttagagagctatctccatctctgttcataaaccctaa 100  Q
    |||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||| |||||||||| ||||||| | ||||||||||||    
T  19209294 tcacctccttctccatccatcactgttgcatcctgctctgtttt-cgatgttgattcttcagtttaaagagctatctgcatctctctccataaaccctaa 19209196  T
Q  101 ttgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttcaaatctaattcttctttaatgatttcatgttctttagttgattgccatgagttt 200  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||    
T  19209195 ttgttgtaaatcgtaaggtaacgtgaaattgaatgtaatttccttcaaatctgattctgctttaatgattacatgttctttagttgattgccatgagttt 19209096  T
Q  201 tccatctgttgttgttaaacctagttgattagtgattaaatatgtcttgtttgctgtatgaaatgttctgtgaaataggttatcaaaaaatttatgaaag 300  Q
    ||||||||||||||||||||||||||||||||| | || |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  19209095 tccatctgttgttgttaaacctagttgattagttagtacatatgtctagtttgctgtatgaaatgttctgtgaaataggctatcaaaaaatttatgaaag 19208996  T
Q  301 tttgtgtctttatgctaaaatggtggttg 329  Q
    |||||||||||||||||||||||||||||    
T  19208995 tttgtgtctttatgctaaaatggtggttg 19208967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 79 - 329
Target Start/End: Original strand, 43300188 - 43300436
Alignment:
Q  79 catctctgttcataaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttcaaatctaattcttctttaatgatttcatgttc 178  Q
    ||||||| | |||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| ||| ||| ||||||||||||| |||||||    
T  43300188 catctctctccataaaccctaattgttgtaaattataaggtaatgtgaaattgaatgtaatttcgttcaattctgatttttctttaatgattacatgttc 43300287  T
Q  179 tttagttgattgccatgagttttccatctgttgttgttaaacctagttgattagtgattaaatatgtcttgtttgctgtatgaaatgttctgtgaaatag 278  Q
    ||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||  | | ||||||||||||||||||||||||||||||||||| |    
T  43300288 ttttgttgatttcaatgagttttccatctgttgttgttaaacctagttgattagtga--atacatgtcttgtttgctgtatgaaatgttctgtgaaatgg 43300385  T
Q  279 gttatcaaaaaatttatgaaagtttgtgtctttatgctaaaatggtggttg 329  Q
    || ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  43300386 gtcatcaaaaaatttatgaaagtttgtgtctttacgctaaaatggtggttg 43300436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 64 - 329
Target Start/End: Complemental strand, 41958717 - 41958456
Alignment:
Q  64 ttagagagctatctccatctctgttcataaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttcaaatctaattcttcttt 163  Q
    |||||||| |||||| |||||| | ||||||||||||||||||| ||||  ||||||| |||||||||||||||||||| ||||| ||| ||| ||||||    
T  41958717 ttagagagttatctc-atctctctccataaaccctaattgttgttaattacaaggtaatgtgaaattgaatgtaatttcgttcaattctgatttttcttt 41958619  T
Q  164 aatgatttcatgttctttagttgattgccatgagttttccatctgttgttgttaaacctagttgattagtgattaaatatgtcttgtttgctgtatgaaa 263  Q
    ||||||| |||||| ||||||||||| | ||||| ||||||| ||||||||||||||||||||||||||||| || ||  |||||| |||||||||||||    
T  41958618 aatgattacatgtt-tttagttgatttcaatgagctttccatatgttgttgttaaacctagttgattagtgaatacat--gtcttgattgctgtatgaaa 41958522  T
Q  264 tgttctgtgaaataggttatcaaaaaatttatgaaagtttgtgtctttatgctaaaatggtggttg 329  Q
    ||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  41958521 tgttctgtgaaatgggtcatcaaaaaatttatgtaagtttgtgtctttatgctaaaatggtggttg 41958456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 51 - 184
Target Start/End: Original strand, 32863630 - 32863763
Alignment:
Q  51 ttgattcttcagtttagagagctatctccatctctgttcataaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttcaaat 150  Q
    ||||||||| ||||||||||||||||||||||  | | || |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |    
T  32863630 ttgattctttagtttagagagctatctccatccatctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaatt 32863729  T
Q  151 ctaattcttctttaatgatttcatgttctttagt 184  Q
    || |||||  ||| |||||| |||||||||||||    
T  32863730 ctgattctgatttgatgattacatgttctttagt 32863763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 51 - 199
Target Start/End: Original strand, 3174146 - 3174298
Alignment:
Q  51 ttgattcttcagtttagagagctatctccatc----tctgttcataaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttc 146  Q
    ||||||||| ||||||||||||||||||||||    ||| | || |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  3174146 ttgattctttagtttagagagctatctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttc 3174245  T
Q  147 aaatctaattcttctttaatgatttcatgttctttagttgattgccatgagtt 199  Q
    || | | ||| |  ||| |||||| |||||||||||||||||| |||||||||    
T  3174246 aattatgattatgatttgatgattacatgttctttagttgatttccatgagtt 3174298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 51 - 184
Target Start/End: Original strand, 10572685 - 10572822
Alignment:
Q  51 ttgattcttcagtttagagagctatctccatc----tctgttcataaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttc 146  Q
    ||||||||| ||||||||||||||||||||||    ||| | || |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  10572685 ttgattctttagtttagagagctatctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttc 10572784  T
Q  147 aaatctaattcttctttaatgatttcatgttctttagt 184  Q
    || | | |||||  ||| |||||| |||||||||||||    
T  10572785 aattgtgattctgatttgatgattacatgttctttagt 10572822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 92 - 180
Target Start/End: Complemental strand, 22273236 - 22273148
Alignment:
Q  92 aaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttcaaatctaattcttctttaatgatttcatgttctt 180  Q
    ||||||||||| |||||||||| |||||||   |||||||||| || |||||||||||| | ||| |||| | |||||| |||||||||    
T  22273236 aaaccctaattcttgtaaattgcaaggtaataagaaattgaatctattttccttcaaatatgattattctctgatgattacatgttctt 22273148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 269 - 329
Target Start/End: Original strand, 28450488 - 28450548
Alignment:
Q  269 tgtgaaataggttatcaaaaaatttatgaaagtttgtgtctttatgctaaaatggtggttg 329  Q
    |||||||| ||| |||||| ||||||||||||||| | |||||| ||||||||||||||||    
T  28450488 tgtgaaatgggtcatcaaagaatttatgaaagtttatatctttaggctaaaatggtggttg 28450548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 6 - 329
Target Start/End: Original strand, 43916043 - 43916363
Alignment:
Q  6 tccttctccatccatcattgttgcatcctgctctgtttttcggtgttgattcttcagtttagagagctatctccatctctgttcataaaccctaattgtt 105  Q
    |||||||||||||||||  || ||||||| |||| |||| | |||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||    
T  43916043 tccttctccatccatcaccgtcgcatcctcctctatttt-ctgtgttgattcttcagtttagagagctatctccatctctctccataaaccctgattgtt 43916141  T
Q  106 gtaaattgtaaggtaacgtgaaattgaatgtaatttccttcaaatctaattcttctttaatgatttcatgttctttagttgattgccatgagttttccat 205  Q
    ||||||||||||| || ||||| || ||||||||||||||||||||| |||||||||||| |||| |||||| |||||||||||||||||||||||||||    
T  43916142 gtaaattgtaaggaaatgtgaattttaatgtaatttccttcaaatctgattcttctttaacgattgcatgttatttagttgattgccatgagttttccat 43916241  T
Q  206 ctgttgttgttaaacctagttgattagtgattaaatatgtcttgtttgctgtatgaaatgttctgtgaaataggttatcaaaaaatttatgaaagtttgt 305  Q
    ||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||| ||| || ||    |||||||||||||||    
T  43916242 ctgttgttgttaaacctagttgattagtgatt--acatgtcttgtttgctgtatgaaatgttctgtgaaatgggtcataaatttttttatgaaagtttgt 43916339  T
Q  306 gtctttatgctaaaatggtggttg 329  Q
    ||||||||||||||||||||||||    
T  43916340 gtctttatgctaaaatggtggttg 43916363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 55 - 199
Target Start/End: Original strand, 1668095 - 1668239
Alignment:
Q  55 ttcttcagtttagagagctatctccatctctgttcataaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttcaaatctaa 154  Q
    ||||||||||||||||||||||||||||||| | || |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| | | |    
T  1668095 ttcttcagtttagagagctatctccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatga 1668194  T
Q  155 ttcttctttaatgatttcatgttctttagttgattgccatgagtt 199  Q
    || |  ||| |||||| ||||||||||||||||||||||||||||    
T  1668195 ttatgatttgatgattacatgttctttagttgattgccatgagtt 1668239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 55 - 199
Target Start/End: Original strand, 16658810 - 16658954
Alignment:
Q  55 ttcttcagtttagagagctatctccatctctgttcataaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttcaaatctaa 154  Q
    ||||||||||||||||||||||||||||||| | || |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| | | |    
T  16658810 ttcttcagtttagagagctatctccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatga 16658909  T
Q  155 ttcttctttaatgatttcatgttctttagttgattgccatgagtt 199  Q
    || |  ||| |||||| ||||||||||||||||||||||||||||    
T  16658910 ttatgatttgatgattacatgttctttagttgattgccatgagtt 16658954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 57 - 199
Target Start/End: Complemental strand, 38521353 - 38521211
Alignment:
Q  57 cttcagtttagagagctatctccatctctgttcataaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttcaaatctaatt 156  Q
    ||||||||||||||| ||||||||||||| | || |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| | | |||    
T  38521353 cttcagtttagagagttatctccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgatt 38521254  T
Q  157 cttctttaatgatttcatgttctttagttgattgccatgagtt 199  Q
     |  ||| |||||| ||||||||||||||||||||||||||||    
T  38521253 atgatttgatgattacatgttctttagttgattgccatgagtt 38521211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 51 - 184
Target Start/End: Complemental strand, 22432428 - 22432291
Alignment:
Q  51 ttgattcttcagtttagagagctatctccatc----tctgttcataaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttc 146  Q
    ||||||||| ||||||||||||||||||||||    ||| | || |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  22432428 ttgattctttagtttagagagctatctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttc 22432329  T
Q  147 aaatctaattcttctttaatgatttcatgttctttagt 184  Q
    || ||| |||||  ||| |||||| |||||||||||||    
T  22432328 aattctgattctgatttgatgattacatgttctttagt 22432291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 51 - 184
Target Start/End: Complemental strand, 29182712 - 29182575
Alignment:
Q  51 ttgattcttcagtttagagagctatctccatc----tctgttcataaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttc 146  Q
    ||||||||| ||||||||||||||||||||||    ||| | || |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  29182712 ttgattctttagtttagagagctatctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttc 29182613  T
Q  147 aaatctaattcttctttaatgatttcatgttctttagt 184  Q
    || ||| |||||  ||| |||||| |||||||||||||    
T  29182612 aattctgattctgatttgatgattacatgttctttagt 29182575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 51 - 158
Target Start/End: Original strand, 27576745 - 27576856
Alignment:
Q  51 ttgattcttcagtttagagagctatctccatc----tctgttcataaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttc 146  Q
    ||||||||| ||||||||||||||||||||||    ||| | || |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  27576745 ttgattctttagtttagagagctatctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttc 27576844  T
Q  147 aaatctaattct 158  Q
    || ||| |||||    
T  27576845 aattctgattct 27576856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 92 - 199
Target Start/End: Original strand, 22014862 - 22014969
Alignment:
Q  92 aaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttcaaatctaattcttctttaatgatttcatgttctttagttgattgc 191  Q
    |||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||| | | ||| || ||| |||||| ||| |||||||||||||| |    
T  22014862 aaaccctaattgttgtaacttgtaagttaatgtgaaattgaatgtaatttccttcaattatgattattgtttgatgattacatattctttagttgatttc 22014961  T
Q  192 catgagtt 199  Q
    ||||||||    
T  22014962 catgagtt 22014969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 55 - 177
Target Start/End: Original strand, 6786427 - 6786550
Alignment:
Q  55 ttcttcagtttagagagctatctccatctctgttcataaaccctaattgttgtaaattgtaaggtaacgtgaaa-ttgaatgtaatttccttcaaatcta 153  Q
    ||||||||||| || |||||||||||||||| | || |||||||||||| ||||| ||||||||||| |||||| |||||||||| ||||||||| |||     
T  6786427 ttcttcagttttgaaagctatctccatctctctccacaaaccctaattgctgtaacttgtaaggtaatgtgaaatttgaatgtaacttccttcaattctg 6786526  T
Q  154 attcttctttaatgatttcatgtt 177  Q
    ||| |  ||| |||||| ||||||    
T  6786527 attttgatttgatgattacatgtt 6786550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 92 - 207
Target Start/End: Complemental strand, 11472451 - 11472333
Alignment:
Q  92 aaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttc----aaatctaattcttctttaatgatttcatgttctttagttga 187  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    || | | |||||  | | |||||| ||||||||||| ||||    
T  11472451 aaaccctaattgttgtaatttgtaaggtaatgtgaaattgaatgtaatttccttcaattaattatgattctgatatgatgattacatgttcttta-ttga 11472353  T
Q  188 ttgccatgagttttccatct 207  Q
    ||||||||| ||||||||||    
T  11472352 ttgccatgatttttccatct 11472333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 51 - 184
Target Start/End: Complemental strand, 774818 - 774680
Alignment:
Q  51 ttgattcttcagtttagagagctatctccatc--tc--tgttcataaaccctaattgttgtaaattgtaaggtaacgtgaaa-ttgaatgtaatttcctt 145  Q
    ||||||||| ||||||||||||||||||||||  ||  | | || |||||||||||||||||| || |||||||| |||||| |||||||||||||||||    
T  774818 ttgattctttagtttagagagctatctccatccatccttctccacaaaccctaattgttgtaacttataaggtaatgtgaaatttgaatgtaatttcctt 774719  T
Q  146 caaatctaattcttctttaatgatttcatgttctttagt 184  Q
    ||| ||| |||||  | | || ||| |||||||||||||    
T  774718 caattctgattctgatatgataattacatgttctttagt 774680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 92 - 182
Target Start/End: Original strand, 42808694 - 42808784
Alignment:
Q  92 aaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttcaaatctaattcttctttaatgatttcatgttcttta 182  Q
    ||||||||||| |||||||||| |||||||  |||||||||||||| |||||||||||| | ||| |||| | |||||| |||||||||||    
T  42808694 aaaccctaattcttgtaaattgcaaggtaatatgaaattgaatgtattttccttcaaatatgattattctctgatgattacatgttcttta 42808784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 121
Target Start/End: Complemental strand, 34213020 - 34212961
Alignment:
Q  62 gtttagagagctatctccatctctgttcataaaccctaattgttgtaaattgtaaggtaa 121  Q
    ||||| |||||||||||||||||| | || |||||||| || ||||||||||||||||||    
T  34213020 gtttaaagagctatctccatctctctccacaaaccctagttcttgtaaattgtaaggtaa 34212961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 213
Target Start/End: Complemental strand, 11472259 - 11472225
Alignment:
Q  179 tttagttgattgccatgagttttccatctgttgtt 213  Q
    |||||||||||||||||||||||||||||||||||    
T  11472259 tttagttgattgccatgagttttccatctgttgtt 11472225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 177
Target Start/End: Original strand, 33360404 - 33360489
Alignment:
Q  92 aaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttcaaatctaattcttctttaatgatttcatgtt 177  Q
    ||||||||||| | |||||||| ||| |||  |||||||||||||| |||||||||||| | ||| |||| | |||||| ||||||    
T  33360404 aaaccctaattctggtaaattgcaagttaatatgaaattgaatgtattttccttcaaatatgattattctctgatgattacatgtt 33360489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 184
Target Start/End: Complemental strand, 780417 - 780362
Alignment:
Q  129 ttgaatgtaatttccttcaaatctaattcttctttaatgatttcatgttctttagt 184  Q
    |||||||||||||||||||| ||| |||||  ||| |||||| |||||||||||||    
T  780417 ttgaatgtaatttccttcaattctgattctgatttgatgattacatgttctttagt 780362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 171; Significance: 9e-92; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 64 - 329
Target Start/End: Original strand, 44660309 - 44660571
Alignment:
Q  64 ttagagagctatctccatctctgttcataaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttcaaatctaattcttcttt 163  Q
    |||||||| |||||| |||||| | ||||||||||||||||| |||||| |||||||| |||||||||||||||||||| ||||| ||| ||| ||||||    
T  44660309 ttagagagttatctc-atctctctccataaaccctaattgttctaaattataaggtaatgtgaaattgaatgtaatttcgttcaattctgatttttcttt 44660407  T
Q  164 aatgatttcatgttctttagttgattgccatgagttttccatctgttgttgttaaacctagttgattagtgattaaatatgtcttgtttgctgtatgaaa 263  Q
    ||||||| |||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||  | | ||||||||||||||||||||||    
T  44660408 aatgattacatgttctttagttgatttcaatgagttttccatccgttgttgttaaacctagttgattagtga--atacatgtcttgtttgctgtatgaaa 44660505  T
Q  264 tgttctgtgaaataggttatcaaaaaatttatgaaagtttgtgtctttatgctaaaatggtggttg 329  Q
    ||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  44660506 tgttctgtgaaatgggtcatcaaaagatttatgaaagtttgtgtctttatgctaaaatggtggttg 44660571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 51 - 184
Target Start/End: Complemental strand, 6472381 - 6472244
Alignment:
Q  51 ttgattcttcagtttagagagctatctccatc----tctgttcataaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttc 146  Q
    ||||||||| ||||||||||||||||||||||    ||| | || |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  6472381 ttgattctttagtttagagagctatctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttc 6472282  T
Q  147 aaatctaattcttctttaatgatttcatgttctttagt 184  Q
    || ||| |||||  ||| |||||| |||||||||||||    
T  6472281 aattctgattctgatttgatgattacatgttctttagt 6472244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 51 - 184
Target Start/End: Original strand, 9371789 - 9371926
Alignment:
Q  51 ttgattcttcagtttagagagctatctccatc----tctgttcataaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttc 146  Q
    ||||||||| ||||||||||||||||||||||    ||| | || |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  9371789 ttgattctttagtttagagagctatctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttc 9371888  T
Q  147 aaatctaattcttctttaatgatttcatgttctttagt 184  Q
    || ||| |||||  ||| |||||| |||||||||||||    
T  9371889 aattctgattctgatttgatgattacatgttctttagt 9371926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 51 - 184
Target Start/End: Complemental strand, 21358159 - 21358022
Alignment:
Q  51 ttgattcttcagtttagagagctatctccatc----tctgttcataaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttc 146  Q
    ||||||||| ||||||||||||||||||||||    ||| | || |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  21358159 ttgattctttagtttagagagctatctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttc 21358060  T
Q  147 aaatctaattcttctttaatgatttcatgttctttagt 184  Q
    || ||| |||||  ||| |||||| |||||||||||||    
T  21358059 aattctgattctgatttgatgattacatgttctttagt 21358022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 51 - 148
Target Start/End: Complemental strand, 35013111 - 35013010
Alignment:
Q  51 ttgattcttcagtttagagagctatctccatc----tctgttcataaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttc 146  Q
    ||||||||| ||||||||||||||||||||||    ||| | || |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  35013111 ttgattctttagtttagagagctatctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttc 35013012  T
Q  147 aa 148  Q
    ||    
T  35013011 aa 35013010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 150
Target Start/End: Original strand, 31419287 - 31419345
Alignment:
Q  92 aaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttcaaat 150  Q
    ||||||||||| |||||||||| |||||||   ||||||||||||| ||||||||||||    
T  31419287 aaaccctaattcttgtaaattgcaaggtaataagaaattgaatgtattttccttcaaat 31419345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 121
Target Start/End: Complemental strand, 12003099 - 12003038
Alignment:
Q  62 gtttagagagctatctccatctctgtt--cataaaccctaattgttgtaaattgtaaggtaa 121  Q
    ||||| |||||||||||||||||| ||  || | ||||||||| ||||||||||||||||||    
T  12003099 gtttaaagagctatctccatctctctttccacacaccctaattcttgtaaattgtaaggtaa 12003038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 5e-50; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 55 - 199
Target Start/End: Original strand, 21355857 - 21356001
Alignment:
Q  55 ttcttcagtttagagagctatctccatctctgttcataaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttcaaatctaa 154  Q
    ||||||||||||||||||||||||||||||| | || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |    
T  21355857 ttcttcagtttagagagctatctccatctctctccacaaaccctaattgttgtaacttgtaaggtaacgtgaaattgaatgtaatttccttcaattctga 21355956  T
Q  155 ttcttctttaatgatttcatgttctttagttgattgccatgagtt 199  Q
    ||||  ||| |||||| |||||||||||||||||| |||||||||    
T  21355957 ttctgatttgatgattacatgttctttagttgatttccatgagtt 21356001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 55 - 199
Target Start/End: Complemental strand, 13740381 - 13740237
Alignment:
Q  55 ttcttcagtttagagagctatctccatctctgttcataaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttcaaatctaa 154  Q
    ||||||||||||||||||||||||||||||| | || |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| | | |    
T  13740381 ttcttcagtttagagagctatctccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatga 13740282  T
Q  155 ttcttctttaatgatttcatgttctttagttgattgccatgagtt 199  Q
    || |  ||| |||||| |||||||||||||||||| |||||||||    
T  13740281 ttatgatttgatgattacatgttctttagttgatttccatgagtt 13740237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 55 - 199
Target Start/End: Complemental strand, 23218349 - 23218205
Alignment:
Q  55 ttcttcagtttagagagctatctccatctctgttcataaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttcaaatctaa 154  Q
    ||||||||||||||||| ||||||||||||| | || |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| | | |    
T  23218349 ttcttcagtttagagagttatctccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatga 23218250  T
Q  155 ttcttctttaatgatttcatgttctttagttgattgccatgagtt 199  Q
    || |  ||| |||||| ||||||||||||||||||||||||||||    
T  23218249 ttatgatttgatgattacatgttctttagttgattgccatgagtt 23218205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 57 - 190
Target Start/End: Original strand, 45143964 - 45144097
Alignment:
Q  57 cttcagtttagagagctatctccatctctgttcataaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttcaaatctaatt 156  Q
    |||||||||||| |||||||||||||||| | || |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| | | |||    
T  45143964 cttcagtttagaaagctatctccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgatt 45144063  T
Q  157 cttctttaatgatttcatgttctttagttgattg 190  Q
     |  ||| |||||| |||||||||||||||||||    
T  45144064 atgatttgatgattacatgttctttagttgattg 45144097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 57 - 190
Target Start/End: Original strand, 45152733 - 45152866
Alignment:
Q  57 cttcagtttagagagctatctccatctctgttcataaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttcaaatctaatt 156  Q
    |||||||||||| |||||||||||||||| | || |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| | | |||    
T  45152733 cttcagtttagaaagctatctccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgatt 45152832  T
Q  157 cttctttaatgatttcatgttctttagttgattg 190  Q
     |  ||| |||||| |||||||||||||||||||    
T  45152833 atgatttgatgattacatgttctttagttgattg 45152866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 51 - 184
Target Start/End: Original strand, 21604408 - 21604545
Alignment:
Q  51 ttgattcttcagtttagagagctatctccatc----tctgttcataaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttc 146  Q
    ||||||||| ||||||||||||||||||||||    ||| | || |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  21604408 ttgattctttagtttagagagctatctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttc 21604507  T
Q  147 aaatctaattcttctttaatgatttcatgttctttagt 184  Q
    || ||| |||||  ||| |||||| |||||||||||||    
T  21604508 aattctgattctgatttgatgattacatgttctttagt 21604545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 51 - 184
Target Start/End: Complemental strand, 46164503 - 46164366
Alignment:
Q  51 ttgattcttcagtttagagagctatctccatc----tctgttcataaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttc 146  Q
    ||||||||| ||||||||||||||||||||||    ||| | || |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  46164503 ttgattctttagtttagagagctatctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttc 46164404  T
Q  147 aaatctaattcttctttaatgatttcatgttctttagt 184  Q
    || ||| |||||  ||| |||||| |||||||||||||    
T  46164403 aattctgattctgatttgatgattacatgttctttagt 46164366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 51 - 184
Target Start/End: Original strand, 47825890 - 47826027
Alignment:
Q  51 ttgattcttcagtttagagagctatctccatc----tctgttcataaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttc 146  Q
    ||||||||| ||||||||||||||||||||||    ||| | || |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  47825890 ttgattctttagtttagagagctatctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttc 47825989  T
Q  147 aaatctaattcttctttaatgatttcatgttctttagt 184  Q
    || ||| |||||  ||| |||||| |||||||||||||    
T  47825990 aattctgattctgatttgatgattacatgttctttagt 47826027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 4 - 186
Target Start/End: Complemental strand, 54785371 - 54785186
Alignment:
Q  4 cctccttctccatccatcattgttgcatcctgctctgtttttcggtgttgattcttcagtttagagagctatctccatc----tctgttcataaacccta 99  Q
    |||||||||||||||||||  |  ||||||| ||| | | ||| || ||||||||| ||||||| ||||| ||||||||    ||| | || ||||||||    
T  54785371 cctccttctccatccatcaccgccgcatcctcctc-gatcttctgtattgattctttagtttagggagctgtctccatccatctctctccacaaacccta 54785273  T
Q  100 attgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttcaaatctaattcttctttaatgatttcatgttctttagttg 186  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||| | | |||||  ||| |||||| ||||||||| |||||    
T  54785272 attgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgattctgatttgatgattacatgttcttaagttg 54785186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 51 - 184
Target Start/End: Complemental strand, 8433117 - 8432980
Alignment:
Q  51 ttgattcttcagtttagagagctatctccatc----tctgttcataaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttc 146  Q
    ||||||||| |||||||| |||||||||||||    ||| | || |||||||||||||||| | ||||||||||| |||||||||||||| |||||||||    
T  8433117 ttgattctttagtttagaaagctatctccatccatctctctccacaaaccctaattgttgttacttgtaaggtaatgtgaaattgaatgttatttccttc 8433018  T
Q  147 aaatctaattcttctttaatgatttcatgttctttagt 184  Q
    || ||| |||||  ||| |||||| |||||||||||||    
T  8433017 aattctgattctgatttgatgattacatgttctttagt 8432980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 124 - 230
Target Start/End: Complemental strand, 3187646 - 3187535
Alignment:
Q  124 tgaaattgaatgtaatttccttcaaatctaattcttctttaatgatttcatgttcttta----gttgattgccatgag-ttttccatctgttgttgttaa 218  Q
    |||||||||||||| ||||||| |||||| |||||||||| |||||| |||||||||||     ||||||||||| || |||| ||||| ||||||||||    
T  3187646 tgaaattgaatgtattttcctttaaatctgattcttctttgatgattacatgttctttaattgattgattgccatcagttttttcatctattgttgttaa 3187547  T
Q  219 acctagttgatt 230  Q
    ||||||||||||    
T  3187546 acctagttgatt 3187535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 92 - 207
Target Start/End: Original strand, 38115468 - 38115586
Alignment:
Q  92 aaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttc----aaatctaattcttctttaatgatttcatgttctttagttga 187  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    || | | |||||  | | |||||| |||||| |||| ||||    
T  38115468 aaaccctaattgttgtaatttgtaaggtaatgtgaaattgaatgtaatttccttcaattaattatgattctgatatgatgattacatgtttttta-ttga 38115566  T
Q  188 ttgccatgagttttccatct 207  Q
    ||||||||||||||||||||    
T  38115567 ttgccatgagttttccatct 38115586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 55 - 197
Target Start/End: Complemental strand, 33754092 - 33753948
Alignment:
Q  55 ttcttcagtttagagagctatctccatctctgttcataaaccctaattgttgtaaattgtaaggt-aacgtgaa--attgaatgtaatttccttcaaatc 151  Q
    ||||||||||| ||||| ||||||||||||| | || ||||||||||||||||||   |||| || ||  ||||  |||||||||||||| |||||| |     
T  33754092 ttcttcagttttgagagttatctccatctctttccacaaaccctaattgttgtaa---gtaatgtgaaattgaaatattgaatgtaattttcttcaatta 33753996  T
Q  152 taattcttctttaatgatttcat--gttctttagttgattgccatgag 197  Q
    | ||| |  ||| |||||| |||  |||||||||||||||||||||||    
T  33753995 tgattttgatttgatgattacatgagttctttagttgattgccatgag 33753948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 182
Target Start/End: Complemental strand, 14800089 - 14799999
Alignment:
Q  92 aaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttcaaatctaattcttctttaatgatttcatgttcttta 182  Q
    ||||||||||| |||||||||  |||||||  ||||||| |||||| |||||||||||| | ||| |||| | |||||| | |||||||||    
T  14800089 aaaccctaatttttgtaaatttcaaggtaatatgaaattaaatgtattttccttcaaatatgattattctctgatgattacgtgttcttta 14799999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 55 - 199
Target Start/End: Complemental strand, 3935501 - 3935357
Alignment:
Q  55 ttcttcagtttagagagctatctccatctctgttcataaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttcaaatctaa 154  Q
    ||||||||||||||||||||||||||||||| | || |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| | | |    
T  3935501 ttcttcagtttagagagctatctccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatga 3935402  T
Q  155 ttcttctttaatgatttcatgttctttagttgattgccatgagtt 199  Q
    || |  ||| |||||| ||||||||||||||||||||||||||||    
T  3935401 ttataatttgatgattacatgttctttagttgattgccatgagtt 3935357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 53 - 184
Target Start/End: Complemental strand, 25697702 - 25697567
Alignment:
Q  53 gattcttcagtttagagagctatctccatc----tctgttcataaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttcaa 148  Q
    ||||||| ||||||||||||||||||||||    ||| | || |||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||    
T  25697702 gattctttagtttagagagctatctccatccatctctctccacaaaccctaattgttgttacttgtaaggtaatgtgaaattgaatgtaatttccttcaa 25697603  T
Q  149 atctaattcttctttaatgatttcatgttctttagt 184  Q
     ||| |||||  ||| |||||| |||||||||||||    
T  25697602 ttctgattctgatttgatgattacatgttctttagt 25697567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 55 - 148
Target Start/End: Complemental strand, 38978502 - 38978409
Alignment:
Q  55 ttcttcagtttagagagctatctccatctctgttcataaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttcaa 148  Q
    |||||||||||||| |||||||||||||||| | || |||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||    
T  38978502 ttcttcagtttagaaagctatctccatctctctccacaaaccctaattgttgtaacttgtaaggtagtgtgaaattgaatgtaatttccttcaa 38978409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 57 - 199
Target Start/End: Complemental strand, 11296 - 11154
Alignment:
Q  57 cttcagtttagagagctatctccatctctgttcataaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttcaaatctaatt 156  Q
    ||||||||||||||||||||||||||||| | || ||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| | | |||    
T  11296 cttcagtttagagagctatctccatctctctccacaaatcctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgatt 11197  T
Q  157 cttctttaatgatttcatgttctttagttgattgccatgagtt 199  Q
     |  ||| |||||| |||||||||||||||||| |||||||||    
T  11196 atgatttgatgattacatgttctttagttgatttccatgagtt 11154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 55 - 190
Target Start/End: Original strand, 21239425 - 21239560
Alignment:
Q  55 ttcttcagtttagagagctatctccatctctgttcataaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttcaaatctaa 154  Q
    |||||||||||||| |||||||||| ||||| | || |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||| |    
T  21239425 ttcttcagtttagaaagctatctccgtctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattctga 21239524  T
Q  155 ttcttctttaatgatttcatgttctttagttgattg 190  Q
    || |  ||| |||||| |||||||||||||||||||    
T  21239525 ttatgatttgatgattacatgttctttagttgattg 21239560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 55 - 190
Target Start/End: Original strand, 52893421 - 52893556
Alignment:
Q  55 ttcttcagtttagagagctatctccatctctgttcataaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttcaaatctaa 154  Q
    |||||||||||||| |||||||||||||||| | || |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| | | |    
T  52893421 ttcttcagtttagaaagctatctccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatga 52893520  T
Q  155 ttcttctttaatgatttcatgttctttagttgattg 190  Q
    || |  ||| |||||| |||||||||||||||||||    
T  52893521 ttatgatttgatgattacatgttctttagttgattg 52893556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 55 - 148
Target Start/End: Complemental strand, 2338943 - 2338850
Alignment:
Q  55 ttcttcagtttagagagctatctccatctctgttcataaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttcaa 148  Q
    ||||||||||||||||| ||||||||||||| | || |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  2338943 ttcttcagtttagagagttatctccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaa 2338850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 51 - 184
Target Start/End: Original strand, 9456396 - 9456533
Alignment:
Q  51 ttgattcttcagtttagagagctatctccatc----tctgttcataaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttc 146  Q
    ||||||||| |||||||| |||||||||||||    ||| | || |||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||    
T  9456396 ttgattctttagtttagacagctatctccatccatctctctccacaaaccctaattgttgtaacttgaaaggtaatgtgaaattgaatgtaatttccttc 9456495  T
Q  147 aaatctaattcttctttaatgatttcatgttctttagt 184  Q
    || ||| |||||  ||| |||||| |||||||||||||    
T  9456496 aattctgattctgatttgatgattacatgttctttagt 9456533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 92 - 180
Target Start/End: Original strand, 40922983 - 40923071
Alignment:
Q  92 aaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttcaaatctaattcttctttaatgatttcatgttctt 180  Q
    ||||||||||| |||||||||| |||||||   ||||||||||||| |||||||||||| | ||| |||| | |||||| |||||||||    
T  40922983 aaaccctaattcttgtaaattgcaaggtaataagaaattgaatgtattttccttcaaatatgattattctctgatgattacatgttctt 40923071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 92 - 180
Target Start/End: Original strand, 2733800 - 2733888
Alignment:
Q  92 aaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttcaaatctaattcttctttaatgatttcatgttctt 180  Q
    ||||||||||| |||||||||| |||||||   |||||||||| || |||||||||||| | ||| |||| | |||||| |||||||||    
T  2733800 aaaccctaattcttgtaaattgcaaggtaataagaaattgaatctattttccttcaaatatgattattctctgatgattacatgttctt 2733888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 7e-37; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 62 - 231
Target Start/End: Complemental strand, 17481109 - 17480946
Alignment:
Q  62 gtttagagagctatctccatctctgttcataaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttcaaatctaattcttct 161  Q
    ||||| |||||||||||||||||| | || ||| ||||||| |||||||||||||||||| ||||||||||||||| |||||||||||| | ||| ||||    
T  17481109 gtttaaagagctatctccatctctctccacaaatcctaattcttgtaaattgtaaggtaatgtgaaattgaatgtattttccttcaaatatgattattct 17481010  T
Q  162 ttaatgatttcatgttctttagttgattgccatgagttttccatctgttgttgttaaacctagttgatta 231  Q
    || |||||| ||||||||||  |||||| ||||||||||      || ||||||||||||||||||||||    
T  17481009 ttgatgattacatgttctttgattgatttccatgagttt------tgctgttgttaaacctagttgatta 17480946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 51 - 184
Target Start/End: Complemental strand, 29599388 - 29599251
Alignment:
Q  51 ttgattcttcagtttagagagctatctccatc----tctgttcataaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttc 146  Q
    ||||||||| ||||||||||||||||||||||    ||| | || |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  29599388 ttgattctttagtttagagagctatctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttc 29599289  T
Q  147 aaatctaattcttctttaatgatttcatgttctttagt 184  Q
    || ||| |||||  ||| |||||| |||||||||||||    
T  29599288 aattctgattctgatttgatgattacatgttctttagt 29599251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 51 - 184
Target Start/End: Original strand, 324661 - 324798
Alignment:
Q  51 ttgattcttcagtttagagagctatctccatc----tctgttcataaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttc 146  Q
    ||||||||| ||||||||||||||||||||||    ||| | || || ||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  324661 ttgattctttagtttagagagctatctccatccatctctctccacaagccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttc 324760  T
Q  147 aaatctaattcttctttaatgatttcatgttctttagt 184  Q
    || ||| |||||  ||| ||||||  ||||||||||||    
T  324761 aattctgattctgatttgatgattagatgttctttagt 324798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 51 - 148
Target Start/End: Original strand, 48184221 - 48184322
Alignment:
Q  51 ttgattcttcagtttagagagctatctccatc----tctgttcataaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttc 146  Q
    ||||||||| ||||||||||||||||||||||    ||| | || |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  48184221 ttgattctttagtttagagagctatctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttc 48184320  T
Q  147 aa 148  Q
    ||    
T  48184321 aa 48184322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 92 - 203
Target Start/End: Complemental strand, 6165131 - 6165018
Alignment:
Q  92 aaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttcaaatctaattcttctttaatgatttc--atgttctttagttgatt 189  Q
    |||||||||||||||||| ||||||| ||| ||||||||||||||||||  |||||| ||| |||||  ||| |||||| |  ||||| |||| ||||||    
T  6165131 aaaccctaattgttgtaacttgtaagttaatgtgaaattgaatgtaattgtcttcaattctgattctgatttgatgattacatatgttttttacttgatt 6165032  T
Q  190 gccatgagttttcc 203  Q
    ||||||||||||||    
T  6165031 gccatgagttttcc 6165018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 92 - 184
Target Start/End: Original strand, 26355032 - 26355125
Alignment:
Q  92 aaaccctaattgttgtaaattgtaaggtaacgtgaaa-ttgaatgtaatttccttcaaatctaattcttctttaatgatttcatgttctttagt 184  Q
    |||||||||||||||||| ||||||||||| |||||| |||||||||| ||||||||| ||| |||||  ||| |||||| |||||||||||||    
T  26355032 aaaccctaattgttgtaacttgtaaggtaatgtgaaatttgaatgtaacttccttcaattctgattctgatttgatgattacatgttctttagt 26355125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 92 - 203
Target Start/End: Complemental strand, 16764619 - 16764506
Alignment:
Q  92 aaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttcaaatctaattcttctttaatgatttc--atgttctttagttgatt 189  Q
    |||||||||||||||||| ||||||| ||| ||||||||||||||||||  |||||| ||| |||||  ||| |||||| |  ||||| |||||||||||    
T  16764619 aaaccctaattgttgtaacttgtaagttaatgtgaaattgaatgtaattgtcttcaattctgattctgatttgatgattacatatgttttttagttgatt 16764520  T
Q  190 gccatgagttttcc 203  Q
    || |||| ||||||    
T  16764519 gcaatgatttttcc 16764506  T

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Target: chr1; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 102 - 184
Target Start/End: Original strand, 26014504 - 26014586
Alignment:
Q  102 tgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttcaaatctaattcttctttaatgatttcatgttctttagt 184  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||| ||| |||||  ||| |||||| |||||| ||||||    
T  26014504 tgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattctgattctgatttgatgattacatgttatttagt 26014586  T

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Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 92 - 194
Target Start/End: Complemental strand, 10801650 - 10801546
Alignment:
Q  92 aaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttcaaatctaattcttctttaatgatttc--atgttctttagttgatt 189  Q
    |||||||||||||||||| ||||||| ||| ||||||||||||||||||  |||||| ||| |||||  ||| |||||| |  ||||| |||||||||||    
T  10801650 aaaccctaattgttgtaacttgtaagttaatgtgaaattgaatgtaattgtcttcaattctgattctgatttgatgattacatatgttttttagttgatt 10801551  T
Q  190 gccat 194  Q
     ||||    
T  10801550 tccat 10801546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 231
Target Start/End: Complemental strand, 52801601 - 52801489
Alignment:
Q  124 tgaaattgaatgtaatttccttcaaatctaattcttctttaatgatttcatgttcttta----gttgattgccatgag-ttttccatctgttgttgttaa 218  Q
    ||||||||||||||  |||||| |||||| |||||||| | ||||||  ||||||||||     ||||||||||| || |||| ||||| ||||||||||    
T  52801601 tgaaattgaatgtatcttcctttaaatctgattcttctctgatgattatatgttctttaattgattgattgccatcagttttttcatctattgttgttaa 52801502  T
Q  219 acctagttgatta 231  Q
    |||||||||||||    
T  52801501 acctagttgatta 52801489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 207
Target Start/End: Original strand, 20727521 - 20727562
Alignment:
Q  165 atgatttcatgttctttagttgattgccatgagttttccatct 207  Q
    |||||| ||||||||||| ||||||||||||||||||||||||    
T  20727521 atgattacatgttcttta-ttgattgccatgagttttccatct 20727562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1160 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: scaffold1160
Description:

Target: scaffold1160; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 55 - 148
Target Start/End: Original strand, 2457 - 2550
Alignment:
Q  55 ttcttcagtttagagagctatctccatctctgttcataaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttcaa 148  Q
    ||||||||||||||||||||||||||||||| | || |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  2457 ttcttcagtttagagagctatctccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaa 2550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 9e-24; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 51 - 184
Target Start/End: Original strand, 32397214 - 32397352
Alignment:
Q  51 ttgattcttcagtttagagagctatctccatc--tc--tgttcataaaccctaattgttgtaaattgtaaggtaacgtgaaatt-gaatgtaatttcctt 145  Q
    ||||||||| ||||||||||||||||||||||  ||  | | || |||||||||||||||||| || |||||||| |||||||| |||||||||||||||    
T  32397214 ttgattctttagtttagagagctatctccatccatccttctccacaaaccctaattgttgtaacttataaggtaatgtgaaatttgaatgtaatttcctt 32397313  T
Q  146 caaatctaattcttctttaatgatttcatgttctttagt 184  Q
    ||| ||| |||||  ||| |||||| |||||||||||||    
T  32397314 caattctgattctgatttgatgattacatgttctttagt 32397352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 51 - 148
Target Start/End: Original strand, 9302991 - 9303087
Alignment:
Q  51 ttgattcttcagtttagagagctatctccatctctgttcataaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttcaa 148  Q
    |||||||| ||||| |||||| ||||||||||||| | || ||||||||||||||  || ||| ||||||| ||||||||||||||||||||||||||    
T  9302991 ttgattctccagttcagagagttatctccatctctctccacaaaccctaattgtt-aaacttgaaaggtaatgtgaaattgaatgtaatttccttcaa 9303087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 92 - 180
Target Start/End: Original strand, 7171054 - 7171142
Alignment:
Q  92 aaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttcaaatctaattcttctttaatgatttcatgttctt 180  Q
    ||||||||||| |||||||||| |||||||   |||||||||| || |||||||||||| | ||| |||| | |||||| |||||||||    
T  7171054 aaaccctaattcttgtaaattgcaaggtaataagaaattgaatctattttccttcaaatatgattattctctgatgattacatgttctt 7171142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 121
Target Start/End: Complemental strand, 14654704 - 14654645
Alignment:
Q  62 gtttagagagctatctccatctctgttcataaaccctaattgttgtaaattgtaaggtaa 121  Q
    ||||| |||||||||||||||||| | || |||||||| || ||||||||||||||||||    
T  14654704 gtttaaagagctatctccatctctctccacaaaccctagttcttgtaaattgtaaggtaa 14654645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1300 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: scaffold1300
Description:

Target: scaffold1300; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 92 - 207
Target Start/End: Complemental strand, 1018 - 900
Alignment:
Q  92 aaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttcct----tcaaatctaattcttctttaatgatttcatgttctttagttga 187  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||||||    | || | | |||||  | | ||||||  |||||||||| ||||    
T  1018 aaaccctaattgttgtaatttgtaaggtaatgtgaaattgaatgtaatttcctttaattaattatgattctgatatgatgattatatgttcttta-ttga 920  T
Q  188 ttgccatgagttttccatct 207  Q
    ||||||||||||||||||||    
T  919 ttgccatgagttttccatct 900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1300; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 213
Target Start/End: Complemental strand, 802 - 755
Alignment:
Q  166 tgatttcatgttctttagttgattgccatgagttttccatctgttgtt 213  Q
    ||||| |||||||||||||||||| ||||||||||||||||| |||||    
T  802 tgattacatgttctttagttgattaccatgagttttccatctattgtt 755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1084 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: scaffold1084
Description:

Target: scaffold1084; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 92 - 207
Target Start/End: Original strand, 1230 - 1348
Alignment:
Q  92 aaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttc----aaatctaattcttctttaatgatttcatgttctttagttga 187  Q
    |||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||    || | | |||||  | | |||||| |||||| |||| ||||    
T  1230 aaacactaattgttgtaatttgtaaggtaatgtgaaattgaatgtaatttccttcaattaattatgattctgatatgatgattacatgtttttta-ttga 1328  T
Q  188 ttgccatgagttttccatct 207  Q
    ||||||||||||||||||||    
T  1329 ttgccatgagttttccatct 1348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1084; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 213
Target Start/End: Original strand, 1434 - 1468
Alignment:
Q  179 tttagttgattgccatgagttttccatctgttgtt 213  Q
    ||||||||||||||| |||||||||||||||||||    
T  1434 tttagttgattgccacgagttttccatctgttgtt 1468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0285 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 92 - 203
Target Start/End: Complemental strand, 8465 - 8352
Alignment:
Q  92 aaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttcaaatctaattcttctttaatgatttc--atgttctttagttgatt 189  Q
    |||||||||||||||||| ||||||| ||| ||||||||||||||||||  |||||| ||| |||||  ||| |||||| |  ||||| |||||||||||    
T  8465 aaaccctaattgttgtaacttgtaagttaatgtgaaattgaatgtaattgtcttcaattctgattctgatttgatgattacatatgttttttagttgatt 8366  T
Q  190 gccatgagttttcc 203  Q
    || |||| ||||||    
T  8365 gcaatgatttttcc 8352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 92 - 203
Target Start/End: Original strand, 2890 - 3003
Alignment:
Q  92 aaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttcaaatctaattcttctttaatgatttc--atgttctttagttgatt 189  Q
    |||||||||||||||||| ||||||| ||| ||||||||||||||||||  |||||| ||| |||||  ||| |||||| |  ||||| |||||||||||    
T  2890 aaaccctaattgttgtaacttgtaagttaatgtgaaattgaatgtaattgtcttcaattctgattctgatttgatgattacatatgttttttagttgatt 2989  T
Q  190 gccatgagttttcc 203  Q
    || |||| ||||||    
T  2990 gcaatgatttttcc 3003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 182
Target Start/End: Original strand, 39638 - 39728
Alignment:
Q  92 aaaccctaattgttgtaaattgtaaggtaacgtgaaattgaatgtaatttccttcaaatctaattcttctttaatgatttcatgttcttta 182  Q
    ||||||||||| |||||||||  |||||||  ||||||| |||||| |||||||||||| | ||| |||| | |||||| | |||||||||    
T  39638 aaaccctaatttttgtaaatttcaaggtaatatgaaattaaatgtattttccttcaaatatgattattctctgatgattacgtgttcttta 39728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 56738 - 56699
Alignment:
Q  172 catgttctttagttgattgccatgagttttccatctgttgt 212  Q
    ||||||||||| |||||||||||||||||||||||| ||||    
T  56738 catgttcttta-ttgattgccatgagttttccatcttttgt 56699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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