View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4934_high_17 (Length: 300)
Name: NF4934_high_17
Description: NF4934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4934_high_17 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 300
Target Start/End: Original strand, 23177895 - 23178177
Alignment:
| Q |
18 |
tgaacaactatactactattccaattgatagcaattctcgctttatactagaagcgtctggggatcttaaataccaagcctggtatgaggaatctaagca |
117 |
Q |
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| T |
23177895 |
tgaacaactatactactattccaattgatagcacttctcgctttatactagaagcgtctggggatcttaaataccaagcctggtatgaggaatctaagca |
23177994 |
T |
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| Q |
118 |
atggatttttctacagtcatcaacgtgtgcgacaaacaattcatgtggannnnnnnccatttgtaatccgcaaactcctgacccttgtcaatgtctcaga |
217 |
Q |
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| T |
23177995 |
atggatttttctacggtcatcaacgtgtgtgacaaacaattcatgtggatttttttccatttgtaatccgcaaactcctgacccttgtcaatgtctcaga |
23178094 |
T |
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| Q |
218 |
ggttttaaacagtctagtgctggtggatgtgttaggataaagcagttgtcctgcaacaacaataacattatacatggatattt |
300 |
Q |
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| T |
23178095 |
ggttttaaacagtctagtgctggtggatgtgttaggataaagaagttgtcctgcaacaacaataacattaaacatggatattt |
23178177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 39 - 166
Target Start/End: Original strand, 23187048 - 23187175
Alignment:
| Q |
39 |
caattgatagcaattctcgctttatactagaagcgtctggggatcttaaataccaagcctggtatgaggaatctaagcaatggatttttctacagtcatc |
138 |
Q |
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| T |
23187048 |
caattaatagcaattctcggtttatattagaagcgtctggggatcttaaataccaagcctggtccgaggaatataggcaatggatttttctacagtttta |
23187147 |
T |
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| Q |
139 |
aacgtgtgcgacaaacaattcatgtgga |
166 |
Q |
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| T |
23187148 |
tcagtgtgtgacaaacaattcatgtgga |
23187175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 215
Target Start/End: Complemental strand, 21182025 - 21181878
Alignment:
| Q |
68 |
gaagcgtctggggatcttaaataccaagcctggtatgaggaatctaagcaatggatttttctacagtcatcaacgtgtgcgacaaacaattcatgtggan |
167 |
Q |
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| T |
21182025 |
gaagtgtctggggatcttaaataccaaggctggtcagaggaatctaagcgttgggtttctctacaatcatccaagtgcggaacaaacaattcttgtggaa |
21181926 |
T |
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| Q |
168 |
nnnnnnccatttgtaatccgcaaactcctgacccttgtcaatgtctca |
215 |
Q |
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| T |
21181925 |
ttttttccatttgtaattcgcaagatcgcgacccttgtcactgtctca |
21181878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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