View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4934_high_8 (Length: 450)
Name: NF4934_high_8
Description: NF4934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4934_high_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 419; Significance: 0; HSPs: 16)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 18 - 444
Target Start/End: Complemental strand, 22913858 - 22913432
Alignment:
| Q |
18 |
aaattcactaccaagtcaataccttggtctattcaatgactcaaacaatggaaacaacaataaccatgtttttggtttggagcttgatactattatgaat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22913858 |
aaattcactaccaagtcaataccttggtctattcaatgaatcaaacaatggaaacaacaataaccatgtttttggtttggagcttgatactattatgaat |
22913759 |
T |
|
| Q |
118 |
acggagttcgatgatatcaatgacaaccatgttggaattgatatcaatggtttgaaatcagagaaatcggcttcagcaggatattatgatattgatggta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
22913758 |
acggagttcgatgatatcaatgacaaccatgttggaattgatatcaatggtttgaaatcagagaaatcggcttcggcaggatattatgatattgatggta |
22913659 |
T |
|
| Q |
218 |
atgagttcaagaatttgagcctttttagtggcttaccaatgcaaatttggttggaatatgatggagtgaagaaaaagattgatgttactttagctccaat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22913658 |
atgagttcaagaatttgagcctttttagtggcttaccaatgcaaatttggttggaatatgatggagtgaagaaaaagattgatgttactttagctccaat |
22913559 |
T |
|
| Q |
318 |
taatgttgttaaaccaaaacaacctttgttatcattgaacaaagatctttcttcaattcttaacactagtatgtatgttggattctcatcttcaacaggt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22913558 |
taatgttgttaaaccaaaacaacctttgttatcattgaacaaagatctttcttcaattcttaacactagtatgtatgttggattctcatcttcaacaggt |
22913459 |
T |
|
| Q |
418 |
tcaattctaacttctcattatattctt |
444 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
22913458 |
tcaattctaacttctcattatattctt |
22913432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 18 - 444
Target Start/End: Complemental strand, 22898453 - 22898030
Alignment:
| Q |
18 |
aaattcactaccaagtcaataccttggtctattcaatgactcaaacaatggaaacaacaataaccatgtttttggtttggagcttgatactattatgaat |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||| || || | || ||||||||||| | | ||||||||||||||| | || |||||||||||||| | | |
|
|
| T |
22898453 |
aaattcactacaaagtcaataccttggtctctttaacaaatccaacaatggaaatagtagcaaccatgtttttggtgttgaacttgatactattattagt |
22898354 |
T |
|
| Q |
118 |
acggagttcgatgatatcaatgacaaccatgttggaattgatatcaatggtttgaaatcagagaaatcggcttcagcaggatattatgatattgatggta |
217 |
Q |
| |
|
| ||||| ||||||||||||| ||||||||||| ||||||||||||| ||||||||||| ||||| || | ||||||||||||||| || ||||| |
|
|
| T |
22898353 |
agtgagtttaatgatatcaatgataaccatgttggtattgatatcaatgatttgaaatcagctaaatcaactcctgcaggatattatgatgttaatggtc |
22898254 |
T |
|
| Q |
218 |
atgagttcaagaatttgagcctttttagtggcttaccaatgcaaatttggttggaatatgatggagtgaagaaaaagattgatgttactttagctccaat |
317 |
Q |
| |
|
| |||||||||||| |||||| |||||| || ||||| | ||| | ||||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
22898253 |
aac---tcaagaatttgacccttttcagtggcaatcctatgcaggtatggattgaatatgatggtgaaaagaaaaagattgatgttactttagctccaat |
22898157 |
T |
|
| Q |
318 |
taatgttgttaaaccaaaacaacctttgttatcattgaacaaagatctttcttcaattcttaacactagtatgtatgttggattctcatcttcaacaggt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| || |||||||||| ||||| | |||| |||||||||||||||||| ||||| | || ||| |
|
|
| T |
22898156 |
taatgttgttaaaccaaaacaacctttgttgtcattgaccagagatctttctccaattttaaacaatagtatgtatgttggattttcatcagctactggt |
22898057 |
T |
|
| Q |
418 |
tcaattctaacttctcattatattctt |
444 |
Q |
| |
|
||| || | |||||||||||||||||| |
|
|
| T |
22898056 |
tcagttttcacttctcattatattctt |
22898030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 79 - 444
Target Start/End: Complemental strand, 22894073 - 22893711
Alignment:
| Q |
79 |
aaccatgtttttggtttggagcttgatactattatgaatacggagttcgatgatatcaatgacaaccatgttggaattgatatcaatggtttgaaatcag |
178 |
Q |
| |
|
||||| ||||||||| | || |||||||||||| ||| ||||| |||||||||||||| ||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
22894073 |
aaccacgtttttggtgttgaacttgatactattgaaaatcgtgagtttgatgatatcaatgataaccatgttggtattgatatcaatgatttgaaatcag |
22893974 |
T |
|
| Q |
179 |
agaaatcggcttcagcaggatattatgatattgatggtaatgagttcaagaatttgagcctttttagtggcttaccaatgcaaatttggttggaatatga |
278 |
Q |
| |
|
|| || || | ||||||||||||||| | ||||| | ||||||||| | |||||| | ||||||| || ||||| | ||| | |||||||| |
|
|
| T |
22893973 |
ctaattcaactcctgcaggatattatgatggtaatggtcaa---ttcaagaatataagccttatcagtggctatcctatgcaggtatggattgaatatga |
22893877 |
T |
|
| Q |
279 |
tggagtgaagaaaaagattgatgttactttagctccaattaatgttgttaaaccaaaacaacctttgttatcattgaacaaagatctttcttcaattctt |
378 |
Q |
| |
|
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
22893876 |
tggtgaaaagaaaaagattgatgttactttagctccaattaatgttgttaaaccaaaacaacctttgttatcattgaccaaagatctttctccaattctt |
22893777 |
T |
|
| Q |
379 |
aacactagtatgtatgttggattctcatcttcaacaggttcaattctaacttctcattatattctt |
444 |
Q |
| |
|
|||| |||||||||||||||||| ||||| | || |||||| ||||||||||||||||||||||| |
|
|
| T |
22893776 |
aacaatagtatgtatgttggattttcatcagctactggttcatttctaacttctcattatattctt |
22893711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 29 - 444
Target Start/End: Complemental strand, 22809823 - 22809399
Alignment:
| Q |
29 |
caagtcaataccttggtctattcaatgactcaaacaatggaaacaacaataaccatgtttttggtttggagcttgatactattatgaatacggagttcga |
128 |
Q |
| |
|
|||||||||| |||||||| || || | || ||||||||||||| | |||||||||||| ||| | || || |||||| || | | || ||||| || |
|
|
| T |
22809823 |
caagtcaatatcttggtctctttaaccaatccaacaatggaaacagtagtaaccatgttttcggtgttgaactagatactcttctaagtagtgagtttga |
22809724 |
T |
|
| Q |
129 |
tgatatcaatgacaaccatgttggaattgatatcaatggtttgaaatcagagaaatcggcttcagcaggatattatgatattgatggtaatgagttcaag |
228 |
Q |
| |
|
|||||||||||| |||||| |||| ||||||||||||| ||||||||||| || || || | |||||||||||||||| | ||||| | |||||| |
|
|
| T |
22809723 |
tgatatcaatgataaccatattggtattgatatcaatgatttgaaatcagctaattcaactcctgcaggatattatgatagtaatggtcaa---ttcaag |
22809627 |
T |
|
| Q |
229 |
aatttgagcctttttagtggcttaccaatgcaaatttggttggaatatgatggagtgaagaaaaagattgatgttactttagctccaattaatgttg--- |
325 |
Q |
| |
|
||| |||||||||| ||||||| || ||||| | ||| | ||||||||||| | |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
22809626 |
aatatgagccttttcagtggctatcctatgcatgtatggattgaatatgatggtgaaaagaaaaagattgatgctactttagctccaattaatgttggtt |
22809527 |
T |
|
| Q |
326 |
---------ttaaaccaaaacaacctttgttatcattgaacaaagatctttcttcaattcttaacactagtatgtatgttggattctcatcttcaacagg |
416 |
Q |
| |
|
||||||||| || ||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22809526 |
ttaatgttgttaaaccaacacgacctttgttatcattcaccaaagatctttctccaattcttaacactagtatgtatgttggattctcatcttcaacagg |
22809427 |
T |
|
| Q |
417 |
ttcaattctaacttctcattatattctt |
444 |
Q |
| |
|
||| |||||| ||||||||||| ||||| |
|
|
| T |
22809426 |
ttctattctatcttctcattatgttctt |
22809399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 22 - 444
Target Start/End: Complemental strand, 22876102 - 22875680
Alignment:
| Q |
22 |
tcactaccaagtcaataccttggtctattcaatgactcaaacaatggaaacaacaataaccatgtttttggtttggagcttgatactattatgaatacgg |
121 |
Q |
| |
|
||||||||| |||||||||||||||| || || | |||||||||||||||| | ||||||||||||||| | || |||||| || || ||| || | |
|
|
| T |
22876102 |
tcactaccacgtcaataccttggtctctttaacaattcaaacaatggaaacagtagcaaccatgtttttggtgttgaacttgattctgttttgactaatg |
22876003 |
T |
|
| Q |
122 |
agttcgatgatatcaatgacaaccatgttggaattgatatcaatggtttgaaatcagagaaatcggcttcagcaggatattatgatattgatggtaatga |
221 |
Q |
| |
|
|||| |||||||| |||| ||||||||||||||||||||||||| ||||||||||| | || |||| |||||||||| ||| || |||| |
|
|
| T |
22876002 |
agtttaatgatatcgatgataaccatgttggaattgatatcaatgatttgaaatcagctatttcaacttctacaggatattacgat---gaatataatcg |
22875906 |
T |
|
| Q |
222 |
gttcaagaatttgagcctttttagtggcttaccaatgcaaatttggttggaatatgatggagtgaagaaaaagattgatgttactttagctccaattaat |
321 |
Q |
| |
|
|||| | |||| |||||| ||||| | || ||||| | ||| | || |||||||||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
22875905 |
attcagggatttatcccttttcagtggatatcccatgcaggtatggattgactatgatggagtgaaaaaaaagattgatgttactttagctccaatagat |
22875806 |
T |
|
| Q |
322 |
gtt-gt--taaaccaaaacaacctttgttatcattgaacaaagatctttcttcaattcttaacactagtatgtatgttggattctcatcttcaacaggtt |
418 |
Q |
| |
|
| | || |||||||| |||||||||||||||||||| ||||||||||||| ||||||| |||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
22875805 |
gctagtaataaaccaacacaacctttgttatcattgaccaaagatctttctccaattctcaacaatagaatgtatgttggattctcatcttcaacaggtt |
22875706 |
T |
|
| Q |
419 |
caattctaacttctcattatattctt |
444 |
Q |
| |
|
|||| || ||||||||||||||||| |
|
|
| T |
22875705 |
taattttagcttctcattatattctt |
22875680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 20 - 444
Target Start/End: Complemental strand, 22889480 - 22889050
Alignment:
| Q |
20 |
attcactaccaagtcaataccttggtctattcaatgactcaaacaatggaaacaacaataaccatgtttttggtttggagcttgatactattatgaatac |
119 |
Q |
| |
|
|||||||||||||||||||||||||||| || || || || |||| |||||||| | ||||||||||||||| | |||||||| ||| | ||| |
|
|
| T |
22889480 |
attcactaccaagtcaataccttggtctctttaacgattccaacagtggaaacagtagcaaccatgtttttggtgttgagcttgacactcgtcaaaattt |
22889381 |
T |
|
| Q |
120 |
ggagttcgatgatatcaatgacaaccatgttggaattgatatcaatggtttgaaatcagagaaatcggcttcagcaggatattatgatattgatggtaat |
219 |
Q |
| |
|
||||| ||||||||||| || ||||||||||||||||||||||||| ||||||||||| | || || | ||||||||||||||| | ||||| | |
|
|
| T |
22889380 |
tgagtttgatgatatcaacgataaccatgttggaattgatatcaatgatttgaaatcagctgattcaactcctgcaggatattatgatggttatggtcaa |
22889281 |
T |
|
| Q |
220 |
gagttcaagaatttgagcctttttagtggcttaccaatgcaaatttggttggaatatgatggagtgaagaaaaagattgatgttactttagctccaatta |
319 |
Q |
| |
|
|||||| |||| ||||| ||||| | || ||||| | ||| | ||||||||||||||||||||||||||||||||||||||||| ||||| | |
|
|
| T |
22889280 |
---ttcaaggatttatccctttccagtggataccctatgcaggtatggattgaatatgatggagtgaagaaaaagattgatgttactttagcaccaatga |
22889184 |
T |
|
| Q |
320 |
atgttgtt---------aaaccaaaacaacctttgttatcattgaacaaagatctttcttcaattcttaacactagtatgtatgttggattctcatcttc |
410 |
Q |
| |
|
||||| | ||||||| |||||||||||||||||||| ||||||||||||||||||||| |||| ||| ||||||||||||||||||||||| |
|
|
| T |
22889183 |
gtgttggtgctagtaataaaccaacacaacctttgttatcattgaccaaagatctttcttcaattctcaacaatagaatgtatgttggattctcatcttc |
22889084 |
T |
|
| Q |
411 |
aacaggttcaattctaacttctcattatattctt |
444 |
Q |
| |
|
|||||| | ||| || ||||||| ||||||||| |
|
|
| T |
22889083 |
aacagggttaatggtagcttctcagtatattctt |
22889050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 274 - 444
Target Start/End: Complemental strand, 22805246 - 22805076
Alignment:
| Q |
274 |
tatgatggagtgaagaaaaagattgatgttactttagctccaattaatgttgttaaaccaaaacaacctttgttatcattgaacaaagatctttcttcaa |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| | ||||| ||||||| ||| ||||||||||||| ||| |
|
|
| T |
22805246 |
tatgatggagtgaagaaaaagattgatgttactttagctccagtttatgttgttaaaccaacaggaccttcgttatcaatgaccaaagatctttctccaa |
22805147 |
T |
|
| Q |
374 |
ttcttaacactagtatgtatgttggattctcatcttcaacaggttcaattctaacttctcattatattctt |
444 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| | | || | ||||||||||||||||| |
|
|
| T |
22805146 |
ttcttaacaatagtatgtatgttggattctcatcttcaacagggttacttgcagcttctcattatattctt |
22805076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 18 - 444
Target Start/End: Complemental strand, 22815217 - 22814785
Alignment:
| Q |
18 |
aaattcactaccaagtcaataccttggtctattcaatgactcaaacaatggaaacaacaataaccatgtttttggtttggagcttgatactattatgaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| || || || || ||||||||||||| || ||||||||||||||| | |||||||| ||| | || |
|
|
| T |
22815217 |
aaattcactaccaagtcaataccttggtctctttaacgattccaacaatggaaacagtaacaaccatgtttttggtgttgagcttgacactcgtcaagat |
22815118 |
T |
|
| Q |
118 |
acggagttcgatgatatcaatgacaaccatgttggaattgatatcaatggtttgaaatcagagaaatcggcttcagcaggatattatgatattgatggta |
217 |
Q |
| |
|
| |||| |||||||||||||| ||||||||||| || ||||||||| ||||||||||| || || || | |||||||||||| || | ||||| |
|
|
| T |
22815117 |
ttgcagtttgatgatatcaatgataaccatgttggtatcgatatcaattatttgaaatcagctaattcaactcctgcaggatattataatgatcatggtc |
22815018 |
T |
|
| Q |
218 |
atgagttcaagaatttgagcctttttagtggcttaccaatgcaaatttggttggaatatgatggagtgaagaaaaagattgatgttactttagctccaat |
317 |
Q |
| |
|
| |||| | | || ||||| | ||| || || || || | ||| | || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22815017 |
aa---ttcagggagttatccctttccaatggatttcctatacaggtatggattgactatgatggagtgaagaaaaagattgatgttactttagctccaat |
22814921 |
T |
|
| Q |
318 |
taatgttgtt---------aaaccaaaacaacctttgttatcattgaacaaagatctttcttcaattcttaacactagtatgtatgttggattctcatct |
408 |
Q |
| |
|
| ||||| | ||||||| |||||||||||||||||||| ||||||||||||||||||||| |||| ||| ||||||||||||||||||||| |
|
|
| T |
22814920 |
gagtgttggtgctagtaataaaccaacacaacctttgttatcattgaccaaagatctttcttcaattctcaacaatagaatgtatgttggattctcatct |
22814821 |
T |
|
| Q |
409 |
tcaacaggttcaattctaacttctcattatattctt |
444 |
Q |
| |
|
|||||||| | | || || ||||||||||||||||| |
|
|
| T |
22814820 |
tcaacagggttacttgtagcttctcattatattctt |
22814785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 271 - 444
Target Start/End: Complemental strand, 22826189 - 22826016
Alignment:
| Q |
271 |
gaatatgatggagtgaagaaaaagattgatgttactttagctccaattaatgttgttaaaccaaaacaacctttgttatcattgaacaaagatctttctt |
370 |
Q |
| |
|
||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||| || |
|
|
| T |
22826189 |
gaatatgatggtgaaaataaaaagattgatgttactttagctccaattaatgttgttaaaccaaaacaacctttgttttcattgaccagagatcttcctc |
22826090 |
T |
|
| Q |
371 |
caattcttaacactagtatgtatgttggattctcatcttcaacaggttcaattctaacttctcattatattctt |
444 |
Q |
| |
|
||||| | |||| |||||||||||||||||||||||| | || |||||| || | |||||||||||||||||| |
|
|
| T |
22826089 |
caattttgaacaatagtatgtatgttggattctcatcagctactggttcagttttcacttctcattatattctt |
22826016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 18 - 442
Target Start/End: Complemental strand, 22831221 - 22830791
Alignment:
| Q |
18 |
aaattcactaccaagtcaataccttggtctattcaatgactcaaacaatggaaacaacaataaccatgtttttggtttggagcttgatactattatgaat |
117 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| || || |||| |||| |||||||| | ||||||||||||||| | |||||||| ||| || ||| |
|
|
| T |
22831221 |
aaattcactaccaaatcaatactttggtctctttaactactccaacattggaaacagtagcaaccatgtttttggtgttgagcttgacactcgtaaaaat |
22831122 |
T |
|
| Q |
118 |
acggagttcgatgatatcaatgacaaccatgttggaattgatatcaatggtttgaaatcagagaaatcggcttcagcaggatattatgatattgatggta |
217 |
Q |
| |
|
||||| |||||||||||||| || |||||||||||||||||||||| ||||||||||| || || || | ||||||||||||||| | |||| |
|
|
| T |
22831121 |
tttgagtttgatgatatcaatgataatcatgttggaattgatatcaatgatttgaaatcagctaattcaactcctgcaggatattatgatgatactggtc |
22831022 |
T |
|
| Q |
218 |
atgagttcaagaatttgagcctttttagtggcttaccaatgcaaatttggttggaatatgatggagtgaagaaaaagattgatgttactttagctccaat |
317 |
Q |
| |
|
|| |||| |||||| |||| ||||| || ||||| | ||| | ||||||||||||||||||||||||||||||||||| ||||||||| | |
|
|
| T |
22831021 |
--ga-ttcaggaatttatcccttaccagtggacatcctatgcaggtatggattgaatatgatggagtgaagaaaaagattgatgttaccttagctccagt |
22830925 |
T |
|
| Q |
318 |
taatgttgtt---------aaaccaaaacaacctttgttatcattgaacaaagatctttcttcaattcttaacactagtatgtatgttggattctcatct |
408 |
Q |
| |
|
|| ||||| | ||||||| |||||| ||||||||||| |||||||||||| ||||||| |||| ||| ||||||||||||||||||||| |
|
|
| T |
22830924 |
tagtgttggttttagtcataaaccaacacaaccgacgttatcattgaccaaagatctttccccaattctcaacaatagaatgtatgttggattctcatct |
22830825 |
T |
|
| Q |
409 |
tcaacaggttcaattctaacttctcattatattc |
442 |
Q |
| |
|
|||||||| | ||| | ||||||||||||||| |
|
|
| T |
22830824 |
tcaacagggttcattgcagcttctcattatattc |
22830791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 442
Target Start/End: Complemental strand, 22840242 - 22839812
Alignment:
| Q |
18 |
aaattcactaccaagtcaataccttggtctattcaatgactcaaacaatggaaacaacaataaccatgtttttggtttggagcttgatactattatgaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| || || | || |||| ||||||| ||||||||||||||| | || ||||||||| || | | | |
|
|
| T |
22840242 |
aaattcactaccaagtcaataccttggtctctttaaccaatccaacattggaaacggtggcaaccatgtttttggtgttgaacttgatactcttctaagt |
22840143 |
T |
|
| Q |
118 |
acggagttcgatgatatcaatgacaaccatgttggaattgatatcaatggtttgaaatcagagaaatcggcttcagcaggatattatgatattgatggta |
217 |
Q |
| |
|
| ||||| |||||||||||||| ||||||||||| ||||||||||||| ||||||||||| || || || | ||||||||||| ||| || || |
|
|
| T |
22840142 |
agtgagtttgatgatatcaatgataaccatgttggtattgatatcaatgatttgaaatcagctaattcaactcctgcaggatattacgat---gaatata |
22840046 |
T |
|
| Q |
218 |
atgagttcaagaatttgagcctttttagtggcttaccaatgcaaatttggttggaatatgatggagtgaagaaaaagattgatgttactttagctccaat |
317 |
Q |
| |
|
|| |||| | |||| ||| | ||||| | || |||||| | ||| | ||||||||| ||||||||||||||||||||||||| ||||||||| | |
|
|
| T |
22840045 |
atcgattcagggatttatccctctccagtggatatcctatgcaagtatggattgaatatgatagagtgaagaaaaagattgatgttaccttagctccatt |
22839946 |
T |
|
| Q |
318 |
taatgttgtt---------aaaccaaaacaacctttgttatcattgaacaaagatctttcttcaattcttaacactagtatgtatgttggattctcatct |
408 |
Q |
| |
|
|| ||||| | ||||||| |||||| ||||||||||| |||||||||||| ||||||| |||| ||| ||||||||||||||||||||| |
|
|
| T |
22839945 |
tagtgttggttttagtcataaaccaacacaaccgacgttatcattgaccaaagatctttccccaattctcaacaatagaatgtatgttggattctcatct |
22839846 |
T |
|
| Q |
409 |
tcaacaggttcaattctaacttctcattatattc |
442 |
Q |
| |
|
|||||||| | ||| | ||||||||||||||| |
|
|
| T |
22839845 |
tcaacagggttcattgcagcttctcattatattc |
22839812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 327 - 444
Target Start/End: Complemental strand, 22885500 - 22885383
Alignment:
| Q |
327 |
taaaccaaaacaacctttgttatcattgaacaaagatctttcttcaattcttaacactagtatgtatgttggattctcatcttcaacaggttcaattcta |
426 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||||| |||| || |||| ||| ||||||||||||||||||||||||||||| | |||| || |
|
|
| T |
22885500 |
taaaccaacacaacctttgttatcattgaccaaagatctttctccaatactcaacaatagaatgtatgttggattctcatcttcaacagggttaattgta |
22885401 |
T |
|
| Q |
427 |
acttctcattatattctt |
444 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
22885400 |
gcttctcattatattctt |
22885383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 271 - 444
Target Start/End: Complemental strand, 22858402 - 22858217
Alignment:
| Q |
271 |
gaatatgatggagtgaagaaaaagattgatgttactttagctccaattaat------------gttgttaaaccaaaacaacctttgttatcattgaaca |
358 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||| || ||||||||||||||| | | |
|
|
| T |
22858402 |
gaatatgatggagtgaagaaaaatattgatgttacattagctccaattaattttggttgtaatgttgttaaaccagcacgacctttgttatcattcacga |
22858303 |
T |
|
| Q |
359 |
aagatctttcttcaattcttaacactagtatgtatgttggattctcatcttcaacaggttcaattctaacttctcattatattctt |
444 |
Q |
| |
|
||||||||||| ||||||| |||| ||| |||||||||||||||||||||||||| || |||| || |||| |||||||||||| |
|
|
| T |
22858302 |
aagatctttctccaattctcaacaatagaatgtatgttggattctcatcttcaaccggggtaattgtagcttcccattatattctt |
22858217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 274 - 444
Target Start/End: Complemental strand, 22880528 - 22880349
Alignment:
| Q |
274 |
tatgatggagtgaagaaaaagattgatgttactttagctccaattaatgttgtt---------aaaccaaaacaacctttgttatcattgaacaaagatc |
364 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||| |||| ||||| | ||||||| || || |||||| ||||||| |||||||| |
|
|
| T |
22880528 |
tatgatggagtgaagaaaaagattgaggttacattagctccgattagtgttggttttaataataaaccaacacgacatttgttgtcattgaccaaagatc |
22880429 |
T |
|
| Q |
365 |
tttcttcaattcttaacactagtatgtatgttggattctcatcttcaacaggttcaattctaacttctcattatattctt |
444 |
Q |
| |
|
||||| ||||||| |||| |||||||||||||||||| |||||||||||| | | |||| || ||||||||||| ||||| |
|
|
| T |
22880428 |
tttctccaattctcaacaatagtatgtatgttggattatcatcttcaacaaggttaattttagcttctcattatgttctt |
22880349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 22805499 - 22805444
Alignment:
| Q |
18 |
aaattcactaccaagtcaataccttggtctattcaatgactcaaacaatggaaaca |
73 |
Q |
| |
|
|||||||||||||| ||||||||||||||| || ||||| || ||||||||||||| |
|
|
| T |
22805499 |
aaattcactaccaaatcaataccttggtctctttaatgattccaacaatggaaaca |
22805444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 121 - 207
Target Start/End: Complemental strand, 22885681 - 22885595
Alignment:
| Q |
121 |
gagttcgatgatatcaatgacaaccatgttggaattgatatcaatggtttgaaatcagagaaatcggcttcagcaggatattatgat |
207 |
Q |
| |
|
||||| ||||| |||||||| |||||| |||| ||||||||||||| ||||||||||| || || || | ||||||||||||||| |
|
|
| T |
22885681 |
gagtttgatgaaatcaatgataaccatattggtattgatatcaatgatttgaaatcagctaattcaactcctgcaggatattatgat |
22885595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 444
Target Start/End: Original strand, 21150524 - 21150956
Alignment:
| Q |
18 |
aaattcactaccaagtcaataccttggtctattcaatgactcaaacaatggaaacaacaataaccatgtttttggtttggagcttgatactattatgaat |
117 |
Q |
| |
|
|||||||||||||| |||||||||||||| || || | || ||||||||||||| | ||||||||||||||| | |||||||| ||| || || |
|
|
| T |
21150524 |
aaattcactaccaacacaataccttggtctctttaacaattccaacaatggaaacagtagcaaccatgtttttggtgttgagcttgacactgttcaagat |
21150623 |
T |
|
| Q |
118 |
acggagttcgatgatatcaatgacaaccatgttggaattgatatcaatggtttgaaatcagagaaatcggcttcagcaggatattatgatattgatggta |
217 |
Q |
| |
|
||||| |||||||||||| | ||||||||||| ||||||||||||| ||||||||||| || || |||| ||||| ||||||||| | ||| |
|
|
| T |
21150624 |
tttgagtttgatgatatcaataataaccatgttggtattgatatcaatgatttgaaatcagctaactcaacttctgcaggctattatgatgataatg--- |
21150720 |
T |
|
| Q |
218 |
atgagttcaagaatttgagcctttttagtggcttaccaatgcaaatttggttggaatatgatggagtgaagaaaaagattgatgttactttagctccaat |
317 |
Q |
| |
|
||| ||||| |||| |||||| ||||| | || ||||| | ||| | ||||||||||| | ||||| |||||| ||||||||||||||||||| |
|
|
| T |
21150721 |
atggattcaatgatttatcccttttcagtggatatcctatgcatgtatggattgaatatgatggtgaaaagaagaagattaatgttactttagctccaat |
21150820 |
T |
|
| Q |
318 |
taatgttgtt---------aaaccaaaacaacctttgttatcattgaacaaagatctttcttcaattcttaacactagtatgtatgttggattctcatct |
408 |
Q |
| |
|
|| ||||| | |||||| | ||||||||||||||||| ||||||||||||| || |||| |||| ||||||||||||||||||||||||| |
|
|
| T |
21150821 |
tagtgttggttttaataaaaaaccagcaagacctttgttatcattgaccaaagatctttctccagttctcaacaatagtatgtatgttggattctcatct |
21150920 |
T |
|
| Q |
409 |
tcaacaggttcaattctaacttctcattatattctt |
444 |
Q |
| |
|
|||||||| | | || | ||||||||||||||||| |
|
|
| T |
21150921 |
tcaacagggttacttgcagcttctcattatattctt |
21150956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 158
Target Start/End: Original strand, 3741442 - 3741560
Alignment:
| Q |
40 |
cttggtctattcaatgactcaaacaatggaaacaacaataaccatgtttttggtttggagcttgatactattatgaatacggagttcgatgatatcaatg |
139 |
Q |
| |
|
|||||||| || ||| ||||||||||||||| ||| ||||||||||||||| | ||| ||||| | |||||||| ||||| |||||||||||| |
|
|
| T |
3741442 |
cttggtctttttaatctctcaaacaatggaaattccaacaaccatgtttttggtgttgagtttgatgtttttatgaatcaagagtttaatgatatcaatg |
3741541 |
T |
|
| Q |
140 |
acaaccatgttggaattga |
158 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
3741542 |
ctaaccatgttggaattga |
3741560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 15628327 - 15628278
Alignment:
| Q |
127 |
gatgatatcaatgacaaccatgttggaattgatatcaatggtttgaaatc |
176 |
Q |
| |
|
|||||||| ||||| ||||||||||| || || ||||||||||||||||| |
|
|
| T |
15628327 |
gatgatattaatgataaccatgttggtatagacatcaatggtttgaaatc |
15628278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University