View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4934_low_13 (Length: 359)
Name: NF4934_low_13
Description: NF4934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4934_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 136; Significance: 7e-71; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 189 - 345
Target Start/End: Complemental strand, 1954485 - 1954333
Alignment:
| Q |
189 |
atgacgcacattgcccttaactaattaaagggtccatttcatcacaataactttgataattaagcatcttccactttcacacctttttctttgtttattg |
288 |
Q |
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| T |
1954485 |
atgacgcacattgcccttaactaattaaagggtccatttcatcacaataactttgataa----gcatcttccactttcacacctttttctttgtttatag |
1954390 |
T |
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| Q |
289 |
aaaatggttgatcactttaaaccgttttccatttacgactatactcatgttcatctc |
345 |
Q |
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| T |
1954389 |
aaaatggttgatcactttaaaccgttttccatttacgactatactcatgttcatctc |
1954333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 19 - 153
Target Start/End: Complemental strand, 1954655 - 1954521
Alignment:
| Q |
19 |
cacacgttacaatattattatcatcatcagtaaatattataagtagaaatgtagaatgaagacaaggttgaagtttgtttcattgagcacttcttttgtt |
118 |
Q |
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| T |
1954655 |
cacacgttacaatattattatcatcatcggtaaatattataagtagaaatgtagaatgaagacaaggttgaagtttgtttcattgagcacttcttttgtt |
1954556 |
T |
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| Q |
119 |
taatttaattgtaagtggttactcccacttgcttt |
153 |
Q |
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| T |
1954555 |
taatttaattgtaagtggttactcccacttgcttt |
1954521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 69 - 142
Target Start/End: Original strand, 1975984 - 1976057
Alignment:
| Q |
69 |
gtagaatgaagacaaggttgaagtttgtttcattgagcacttcttttgtttaatttaattgtaagtggttactc |
142 |
Q |
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| T |
1975984 |
gtagaatgaagagaaagttgaagtttgtttcattgagcatttcttttgtttaatttaattataagtggttactc |
1976057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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