View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4934_low_2 (Length: 650)
Name: NF4934_low_2
Description: NF4934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4934_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 539; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 13 - 634
Target Start/End: Original strand, 28752219 - 28752841
Alignment:
| Q |
13 |
tcatcaaaatactaaaactaagagtgtcgatcgatattcacataaa-cttaccactaattgtcaaggcatcaaactgcgggggcatccacagaacnnnnn |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
28752219 |
tcatcaaaatactaaaactaagagtgtcgatcgatattcacataaaacttaccactaattgtcaaggcatcaaactgtgggggcatccacagaacttttt |
28752318 |
T |
|
| Q |
112 |
nnnnnnnnnnnnnnnctgcctcgctttcctgttcctttctttggtgtacggggcaaaatcctgaggcggtaactttgtagtgaaggtccaaatatgctat |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28752319 |
tcttttttgctttttctgcctcgctttcctgttcctttctttggtgtacggggcaaaatcctgaggcggtaactttgtagtgaaggtccaaatatgctat |
28752418 |
T |
|
| Q |
212 |
actttccagcactactaaaagcagtttctgcatcacagcgtcttttgaaaacaactctagcgcggttagtcctctctagaagctcagtctttgattcaac |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
28752419 |
actttccagcactactaaaagcagtttctgcatcacagcgtcttttgaaaacaactctagcacggttagtcctctctagaagctcagtctttgattcaac |
28752518 |
T |
|
| Q |
312 |
tagcggcccaaagcggccaaagatcttgttgagatccgctgttgaaggaaccgaatccaagtttgtaaatttcagggtaagagaagtgggagaactctca |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28752519 |
tagcggcccaaagcggccaaagatcttgttgagatccgctgttgaaggaactgaatccaagtttgtaaatttcagggtaagagaagtgggagaactctca |
28752618 |
T |
|
| Q |
412 |
ttcacattttccacatggttggaaggttctgatccgagatttccattggattcttgatgcattaaacccaaatttgggctaatttcagcagctggcaaaa |
511 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28752619 |
ttcacattttccacatagttggaaggttctgatccgagatttccattggattcttgatgcattaaacccaaatttgggctaatttcagcagctggcaaaa |
28752718 |
T |
|
| Q |
512 |
gttcctctctttcattctggttttttaacagtgtctcctcatcagaaatgctttgaattattctatcagtccaataagaatcattgcaaagcaccattgg |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28752719 |
gttcctctctttcattctggttttttaacagtgtctcctcatcagaaatgctttgaattattctatcagtccaataagaatcattgcaaagcaccattgg |
28752818 |
T |
|
| Q |
612 |
tgttggtgttgacatagaagctg |
634 |
Q |
| |
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||||||||||||||||||||||| |
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|
| T |
28752819 |
tgttggtgttgacatagaagctg |
28752841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 380
Target Start/End: Original strand, 28749488 - 28749641
Alignment:
| Q |
227 |
taaaagcagtttctgcatcacagcgtcttttgaaaacaactctagcgcggttagtcctctctagaagctcagtctttgattcaactagcggcccaaagcg |
326 |
Q |
| |
|
|||| ||||||||||||| ||| ||||||| |||||||||||| | || |||||| || ||| || |||||||| |||||| ||| || |||||| | |
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|
| T |
28749488 |
taaatgcagtttctgcattacaacgtctttggaaaacaactctggtgcctttagtcttcggtagcagttcagtcttccattcaattaggggtccaaagtg |
28749587 |
T |
|
| Q |
327 |
gccaaagatcttgttgagatccgctgttgaaggaaccgaatccaagtttgtaaa |
380 |
Q |
| |
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| ||| || ||||| ||| || ||||||| ||| ||||| ||||||||||| |
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|
| T |
28749588 |
acaaaaaatattgttaagaaacgttgttgaacgaatggaatcgaagtttgtaaa |
28749641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 13 - 631
Target Start/End: Complemental strand, 44866539 - 44865915
Alignment:
| Q |
13 |
tcatcaaaatactaaaactaagagtgtcgatcgatattcacataaacttaccactaattgtcaaggcatcaaactgcgggggcatc------cacagaac |
106 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||| |||||||||||| ||||||||||||||||||||||||||| || |||||| |||||||| |
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|
| T |
44866539 |
tcatcaaaatactaaaactaagactgtcggtcgatgttcacataaactcaccactaattgtcaaggcatcaaactgtggcggcatcggcatccacagaac |
44866440 |
T |
|
| Q |
107 |
nnnnnnnnnnnnnnnnnnnnctgcctcgctttcctgttcctttctttggtgtacggggcaaaatcctgaggcggtaactttgtagtgaaggtccaaatat |
206 |
Q |
| |
|
|| |||||||||||||| | ||||| ||||||||| ||||||||| |||||||||||||||||| ||||||||||||||| |
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|
| T |
44866439 |
ttttttcttttttgctttttctacctcgctttcctgtgcttttctctggtgtacgaggcaaaatcttgaggcggtaactttgtaatgaaggtccaaatat |
44866340 |
T |
|
| Q |
207 |
gctatactttccagcactactaaaagcagtttctgcatcacagcgtcttttgaaaacaactctagcgcggttagtcctctctagaagctcagtctttgat |
306 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| || || ||||||||| | |||||||||||| |||| ||||| | |||||||||| |
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|
| T |
44866339 |
gctatactttccagcactgctaaaagcagtttctgcatcacaatatcgttcaaaaacaactttggcgcggttagtcttctcgagaagtttagtctttgat |
44866240 |
T |
|
| Q |
307 |
tcaactagcggcccaaagcggccaaagatcttgttgagatccgctgttgaaggaaccgaatccaagtttgtaaatttcagggtaagagaagtgggagaac |
406 |
Q |
| |
|
|||| ||| | |||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||| ||||||||||| ||||||| |
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|
| T |
44866239 |
tcaattagtgtcccaaagcggccaaagatcttgttgagatccgttgttgtaggaactgaatccaagtttgtaaatttcagagtaagagaagttggagaac |
44866140 |
T |
|
| Q |
407 |
tctcattcacattttccacatggttggaaggttctgatccgagatttccattggattcttgatgcattaaacccaaatttgggctaatttcagcagctgg |
506 |
Q |
| |
|
| || ||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||| ||||| || |
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|
| T |
44866139 |
tatcgttcacatgttccacatggttggaaggttctgatccaagatttccattggtttcttgatgcattaaacccaaaccagggctaatttcggcagcggg |
44866040 |
T |
|
| Q |
507 |
caaaagttcctctctttcattctggttttttaacagtgtctcctcatcagaaatgctttgaattattctatcagtccaataagaatcattgcaaagcacc |
606 |
Q |
| |
|
|| |||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
44866039 |
cataagttcatctctttcattctggtttttcaacagtgtctcctcttcagaaatgctttgaattattctatcagtccaataagaatcattgcaaagctcc |
44865940 |
T |
|
| Q |
607 |
attggtgttggtgttgacatagaag |
631 |
Q |
| |
|
|||||||| |||||||||||||||| |
|
|
| T |
44865939 |
attggtgtcggtgttgacatagaag |
44865915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 45246922 - 45246993
Alignment:
| Q |
13 |
tcatcaaaatactaaaactaagagtgtcgatcga-tattcacataaacttaccactaattgtcaaggcatca |
83 |
Q |
| |
|
|||||||| |||||||||||||| ||||||| || |||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
45246922 |
tcatcaaagtactaaaactaagactgtcgattgaatattcacataaactcaccactaactgtcaaggcatca |
45246993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 573 - 631
Target Start/End: Original strand, 45247006 - 45247064
Alignment:
| Q |
573 |
tctatcagtccaataagaatcattgcaaagcaccattggtgttggtgttgacatagaag |
631 |
Q |
| |
|
|||||||||||||||||| |||| ||||||| ||| |||||||||| |||||||||||| |
|
|
| T |
45247006 |
tctatcagtccaataagagtcatagcaaagctccactggtgttggttttgacatagaag |
45247064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 573 - 631
Target Start/End: Original strand, 45249382 - 45249440
Alignment:
| Q |
573 |
tctatcagtccaataagaatcattgcaaagcaccattggtgttggtgttgacatagaag |
631 |
Q |
| |
|
||||||||| ||||||||||||| ||||||| ||| |||| |||||||||||||||||| |
|
|
| T |
45249382 |
tctatcagttcaataagaatcatagcaaagctccactggttttggtgttgacatagaag |
45249440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 127 - 362
Target Start/End: Original strand, 19714015 - 19714247
Alignment:
| Q |
127 |
ctgcctcgctttcctgttcctttctttggtgtacggggcaaaatcctgaggcggtaactttgtagtgaaggtccaaatatgctatactttccagcactac |
226 |
Q |
| |
|
|||||||||||||| ||||||||||||||| || | ||||||| | |||| | | |||||||||| || |||||| | ||||||||| | | |
|
|
| T |
19714015 |
ctgcctcgctttccggttcctttctttggtttatgaggcaaaaccttgagatgaaagctttgtagtgcagatccaaaa---cgatactttccgatatgag |
19714111 |
T |
|
| Q |
227 |
taaaagcagtttctgcatcacagcgtcttttgaaaacaactctagcgcggttagtcctctctagaagctcagtctttgattcaactagcggcccaaagcg |
326 |
Q |
| |
|
|||||||||||||||||||||| ||| | | |||||||||||| ||| |||||| || |||| | |||||||||||||||| || || ||||||| |
|
|
| T |
19714112 |
taaaagcagtttctgcatcacaacgtttctcgaaaacaactctgacgctattagtcttcgctagcaattcagtctttgattcaattaagggaccaaagca |
19714211 |
T |
|
| Q |
327 |
gccaaagatcttgttgagatccgctgttgaaggaac |
362 |
Q |
| |
|
|| || | |||||||||| |||||||||||||| |
|
|
| T |
19714212 |
gcataaaagcttgttgagaatagctgttgaaggaac |
19714247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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