View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4934_low_21 (Length: 271)
Name: NF4934_low_21
Description: NF4934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4934_low_21 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 13 - 271
Target Start/End: Complemental strand, 34059654 - 34059381
Alignment:
| Q |
13 |
ttgtgactttgttgtattttaatggcattttactccnnnnnnncttacaaagctgttcttaaaattggtataagaattgcactcaaaaggttaacaccct |
112 |
Q |
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| T |
34059654 |
ttgtgactttgttgtattttaatggcattttactcctttttttcttacaaaactgttcttaaaattggtataacaattgcactcaaaaggttaacaccct |
34059555 |
T |
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| Q |
113 |
ttgagagaaattcactggagagtaagagaaaatcagtgtagaggcaatgactgattgagctagagctt---------------cttggagtggttgaaag |
197 |
Q |
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| T |
34059554 |
ttgagagaaattcactggagagtaagcgaaaatcagtgtagaggcaatgacagattgagctagagcttcttgcaagcaagtttcttggagtggttgaaag |
34059455 |
T |
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| Q |
198 |
gtcttcaatatcttgattgaagtgtctttgaaggtaatgtatagtgataggaacaagaggatggatgtgtcttt |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
34059454 |
gtcttcaatatcttgattgaagtgtctttgaaggtaatgtttagtgataagaacaagaggatggatgtgtcttt |
34059381 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 182
Target Start/End: Complemental strand, 6505034 - 6504910
Alignment:
| Q |
58 |
tacaaagctgttcttaaaattggtataagaattgcactcaaaaggttaacaccctttgagagaaattcactggagagtaagagaaaatcagtgtagaggc |
157 |
Q |
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|||||| |||||||| ||| |||| | | |||||| | |||||| |||||||||||||||| ||||| | |||||||| || ||| || ||| |||||| |
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| T |
6505034 |
tacaaaactgttcttgaaaatggtctcataattgcggttaaaaggctaacaccctttgagagcaattcgccggagagtaggaaaaagtcggtgaagaggc |
6504935 |
T |
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| Q |
158 |
aatgactgattgagctagagcttct |
182 |
Q |
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|| || || |||||||||||||| |
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| T |
6504934 |
aaatacaaatggagctagagcttct |
6504910 |
T |
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