View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4934_low_22 (Length: 269)
Name: NF4934_low_22
Description: NF4934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4934_low_22 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 7e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 14 - 269
Target Start/End: Original strand, 47952358 - 47952613
Alignment:
| Q |
14 |
cagggacgacgtggtggtgaggtgagaggaggacgaaggagggagcggcggaggtaaagaggttgacggagacgacgacggtgacggcgttggtaggaca |
113 |
Q |
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| T |
47952358 |
cagggacgatgtggtggtgaggtgagaggaggacgaatgagggagcggtggaggtaaagaggttgacggagacgacgacggtgacggcgttggtaggaca |
47952457 |
T |
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| Q |
114 |
taggtagcccagatctaaaacggaaggatgggagatcgtcgtttcattcgccgtcgtcggnnnnnnnnttgggccaccgccggcgttggtgagctttgga |
213 |
Q |
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| T |
47952458 |
taggtagcccagatctaaaacggaaggatgggagatcgtcgtttcattcgccgtcgcaggaaaaaaaattgggccgccgccggtggtggtgagctttgga |
47952557 |
T |
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| Q |
214 |
ttgagggagaaaggnnnnnnngggtgcaggaatagagagagggaaggaaacactct |
269 |
Q |
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| T |
47952558 |
ttgagggagaaaggagaaaaagggtgcaggaataaagagaaggaaggaaacactct |
47952613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 14 - 173
Target Start/End: Original strand, 26594347 - 26594505
Alignment:
| Q |
14 |
cagggacgacgtggtggtgaggtgagaggaggacgaaggagggagcggcggaggtaaagaggttgacggagacgacgacggtgacggcgttggtaggaca |
113 |
Q |
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| T |
26594347 |
cagggacgacgtgacggtgaggcgagaggaggacgaaggagggagtggtggaggtaaagaagttgatggagacgacgacggtgacagagttggtaggaca |
26594446 |
T |
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| Q |
114 |
taggtagcccagatctaaaacggaaggatgggagatcgtcgtttcattcgccgtcgtcgg |
173 |
Q |
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| T |
26594447 |
gaggtagcctagatctgaaac-gaaagatgggagattgtcatttcattcgctgtcgtcgg |
26594505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 16037035 - 16037088
Alignment:
| Q |
18 |
gacgacgtggtggtgaggtgagaggaggacgaaggagggagcggcggaggtaaa |
71 |
Q |
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| T |
16037035 |
gacgaagtggtggtgatgtgagaggagaacggaggagggagcggcggagataaa |
16037088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 91
Target Start/End: Original strand, 35579361 - 35579418
Alignment:
| Q |
34 |
ggtgagaggaggacgaaggagggagcggcggaggtaaagaggttgacggagacgacga |
91 |
Q |
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| T |
35579361 |
ggtgagaggaggacggaggagggagtaggggaggcaaagaagttgacggagacaacga |
35579418 |
T |
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